PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc012999.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 436aa MW: 48060.5 Da PI: 6.3946

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc012999.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.6	2.7e-12	191	247	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Cse_sc012999.1_g030.1 191 SKYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 247 89*****************433.44555535555.779999************98 PP
2	AP2	47	6.5e-15	292	341	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Cse_sc012999.1_g030.1 292 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 341 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MNNNNDDNWL GFSLNHHRHH QDDGDGGGGG EGGGSPMMAI DSFQPCTTNT QDSGDNPKLE 60 DFLGGSGCYP TASQEEEFGG SGVRGAQFST PTSLPLPQPC ISYYGYPYYT TFATTPTNQT 120 PQHNYLIPAA TNDNIPHDGA ITQISEIKSS SLSLDCDDHH VSNNDRKRAV VETKALTKNG 180 KAVDSFGQRT SKYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQGGYDK EEKAARAYDL 240 AALKYWGPTT HINFPLATYE NELEEMKNMS RQEFVANLRR KSSGFSRGAS MYRGVTRHHQ 300 HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVTRIYS 360 SSSLIAGELA KRSPNDTGPT MVETSSEPLL AITNGPCNDF PETVWTGNQD QPQGANNIQN 420 DSPALQDTSP RETGLT

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MNNNNDDNWL GFSLNHHRHH QDDGDGGGGG EGGGSPMMAI DSFQPCTTNT QDSGDNPKLE  60
DFLGGSGCYP TASQEEEFGG SGVRGAQFST PTSLPLPQPC ISYYGYPYYT TFATTPTNQT  120
PQHNYLIPAA TNDNIPHDGA ITQISEIKSS SLSLDCDDHH VSNNDRKRAV VETKALTKNG  180
KAVDSFGQRT SKYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQGGYDK EEKAARAYDL  240
AALKYWGPTT HINFPLATYE NELEEMKNMS RQEFVANLRR KSSGFSRGAS MYRGVTRHHQ  300
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GTSAVTNFDI SRYDVTRIYS  360
SSSLIAGELA KRSPNDTGPT MVETSSEPLL AITNGPCNDF PETVWTGNQD QPQGANNIQN  420
DSPALQDTSP RETGLT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-115	AP2 family protein