PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013025.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 422aa MW: 45928.7 Da PI: 8.4846

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013025.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	6.9e-06	80	105	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + C++Gd C++aHg+ Cse_sc013025.1_g010.1 80 KSRLCSKYNIAEGCRFGDICHYAHGE 105 679*********************96 PP
2	zf-CCCH	32.7	1.2e-10	251	275	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +Gd+C+FaHg Cse_sc013025.1_g010.1 251 FKTKLCENFTK-GSCTFGDKCHFAHG 275 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
LVWTVFFFTF DTIFTFPFLG LMCSTSGCPF GEGCHFLHYV PGGFKAINQM SGGNPSLPPT 60 VRNPVIPPSF PDGSSPPAVK SRLCSKYNIA EGCRFGDICH YAHGEWEFGK PTVPSHHEDP 120 QSMGPPPGNR LTGGPRMGFN PPQEIASAGF GASATTKISV NAALGGPIIS INGINSKQIC 180 RMTGVKLSVR DHESDPNLKN IELEGTFDQI KRASEMVQQL IVNLTAAAGP HQQQKSFGKP 240 GGGFGGPAGN FKTKLCENFT KGSCTFGDKC HFAHGTEELP KGAIIQKNLS QNVCSMWPDV 300 GPNAMAVFAG SIYGLMLKLL PAYIRGWFND ITEAYLSSKI EEFTKNSCSH EIIKYEFAML 360 FADIVPKTAE NFRALCTGEK GNSQKIGRPL HYKGSFFHRI IKGSLAQVFW FLRLLGQAFV 420 LE

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

LVWTVFFFTF DTIFTFPFLG LMCSTSGCPF GEGCHFLHYV PGGFKAINQM SGGNPSLPPT  60
VRNPVIPPSF PDGSSPPAVK SRLCSKYNIA EGCRFGDICH YAHGEWEFGK PTVPSHHEDP  120
QSMGPPPGNR LTGGPRMGFN PPQEIASAGF GASATTKISV NAALGGPIIS INGINSKQIC  180
RMTGVKLSVR DHESDPNLKN IELEGTFDQI KRASEMVQQL IVNLTAAAGP HQQQKSFGKP  240
GGGFGGPAGN FKTKLCENFT KGSCTFGDKC HFAHGTEELP KGAIIQKNLS QNVCSMWPDV  300
GPNAMAVFAG SIYGLMLKLL PAYIRGWFND ITEAYLSSKI EEFTKNSCSH EIIKYEFAML  360
FADIVPKTAE NFRALCTGEK GNSQKIGRPL HYKGSFFHRI IKGSLAQVFW FLRLLGQAFV  420
LE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	5e-40	C3H family protein