PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013251.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 453aa MW: 50441.6 Da PI: 8.5607

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013251.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2.1e-05	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Cse_sc013251.1_g030.1 96 FVCEVCNKGFQRDQNLQLHRRGH 118 89*******************88 PP
2	zf-C2H2	12.7	0.00039	173	195	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + Cse_sc013251.1_g030.1 173 WKCEKCSKRYAVQSDWKAHSKIC 195 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MKALKGMFLD DSMSNLTSAS NEASLSSSSN KNEVGTMYPP TQQMQQQQQS FASVPINSNN 60 IQTQTNKKKR NLPGNPDPEA EVIAMSPKTL MATNRFVCEV CNKGFQRDQN LQLHRRGHNL 120 PWKLKQRSKT EVVRKKVYVC PEPSCVHHEP ARALGDLTGI KKHFSRKHGE KKWKCEKCSK 180 RYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF CGALAGEINL GRSSSSLLSP 240 TDHHPLHLPI TFPLKTEPEF SSNIMTNILQ QNNQLPSWFI HHQQDPDNDN ASNMSATALL 300 QKAAQIGVTM SKAAASTNTA NVMSQQQQHQ SILSGAHQHD HMCAPTTLLT AHHHHISGHG 360 NLSSCGDHNQ QGMLGLSGGQ FSNVTTDCFD QICATTNTPM HDFLGLKGFP PPNSGHHFLD 420 MAGLDHMSNT SAYHHQQPQH DPKQNQDELP WHG

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MKALKGMFLD DSMSNLTSAS NEASLSSSSN KNEVGTMYPP TQQMQQQQQS FASVPINSNN  60
IQTQTNKKKR NLPGNPDPEA EVIAMSPKTL MATNRFVCEV CNKGFQRDQN LQLHRRGHNL  120
PWKLKQRSKT EVVRKKVYVC PEPSCVHHEP ARALGDLTGI KKHFSRKHGE KKWKCEKCSK  180
RYAVQSDWKA HSKICGTREY RCDCGTLFSR RDSFITHRAF CGALAGEINL GRSSSSLLSP  240
TDHHPLHLPI TFPLKTEPEF SSNIMTNILQ QNNQLPSWFI HHQQDPDNDN ASNMSATALL  300
QKAAQIGVTM SKAAASTNTA NVMSQQQQHQ SILSGAHQHD HMCAPTTLLT AHHHHISGHG  360
NLSSCGDHNQ QGMLGLSGGQ FSNVTTDCFD QICATTNTPM HDFLGLKGFP PPNSGHHFLD  420
MAGLDHMSNT SAYHHQQPQH DPKQNQDELP WHG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	136	KLKQRSKTEVVRKK
2	125	138	KLKQRSKTEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-107	C2H2 family protein