PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013253.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 465aa MW: 51978.1 Da PI: 9.8497

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013253.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.6	6.6e-09	134	176	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eE ++l d+++++ + + Ia ++++ Rt +++k+r+++ Cse_sc013253.1_g020.1 134 TWTKEETDQLFDLCERFDLR-FVVIADRFPTSRTVEELKHRYYS 176 7*****************.*******************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MDAKDILGIP KANSSSIPVE KKSKPPKESQ RKPDGISREV YALTGGVAPL MPAVDVNTLH 60 PKKRPQPTNN DKITWEWLSF TNSARKDNLE LYHWVRVVNG TPPTGDYSFA KYNKSVDVIK 120 YTDEEYEKHL TDSTWTKEET DQLFDLCERF DLRFVVIADR FPTSRTVEEL KHRYYSVSRT 180 ILIARAPSPA DVSGHPLVKE PYNISHEIDR KRALSMVLSQ TKHQERKDAE ILSEAKKIME 240 SRMAAKATVS PSVLQAAQDA ELAATQNASP ERMEKTSAPV DIASPSNIQV TSGIAPLTSM 300 AENAAAAAAS LRTLRVYLRT YALDQMVQAA SSSAGLRTIK RVEQFLQELK VNLKPKVPTK 360 AVCAEHLELR KEILTLLNLQ KLLQNKEEGS SYRESSYTDL PDGPKLLQRG MDQDRTFVPD 420 SVSYGAISAE RVVKRDQKRK GPGREAPSSP AHSNKRPRKL KATDS

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MDAKDILGIP KANSSSIPVE KKSKPPKESQ RKPDGISREV YALTGGVAPL MPAVDVNTLH  60
PKKRPQPTNN DKITWEWLSF TNSARKDNLE LYHWVRVVNG TPPTGDYSFA KYNKSVDVIK  120
YTDEEYEKHL TDSTWTKEET DQLFDLCERF DLRFVVIADR FPTSRTVEEL KHRYYSVSRT  180
ILIARAPSPA DVSGHPLVKE PYNISHEIDR KRALSMVLSQ TKHQERKDAE ILSEAKKIME  240
SRMAAKATVS PSVLQAAQDA ELAATQNASP ERMEKTSAPV DIASPSNIQV TSGIAPLTSM  300
AENAAAAAAS LRTLRVYLRT YALDQMVQAA SSSAGLRTIK RVEQFLQELK VNLKPKVPTK  360
AVCAEHLELR KEILTLLNLQ KLLQNKEEGS SYRESSYTDL PDGPKLLQRG MDQDRTFVPD  420
SVSYGAISAE RVVKRDQKRK GPGREAPSSP AHSNKRPRKL KATDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	433	439	VKRDQKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein