PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc013268.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25325.8 Da    PI: 6.1716
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc013268.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF823.8e-261060151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+i+n + r vtfskRr g++KKAeELSvLCda+vavi+fss+ kl+ yss
  Cse_sc013268.1_g040.1 10 KKIDNATARRVTFSKRRRGLFKKAEELSVLCDADVAVILFSSSEKLFHYSS 60
                           68***********************************************96 PP
2K-box55.62.2e-19931721998
                  K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                             ++akL ke+ +   ++R+l Ge+L+ L ++eL+qLe+ Le +l+++ +kK+e+++++i++lq+ke +l+een +Lr++l
  Cse_sc013268.1_g040.1  93 ANYAKLSKEVAERTLQLRRLRGEELQGLGIEELHQLEKLLEAGLSRVVAKKSEVIMNEISHLQEKELKLKEENDKLRQEL 172
                            6799******9999999************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MMVREKVQLK KIDNATARRV TFSKRRRGLF KKAEELSVLC DADVAVILFS SSEKLFHYSS  60
SSMKEVLERR SLHSKNLETL NQPSLELQLV EDANYAKLSK EVAERTLQLR RLRGEELQGL  120
GIEELHQLEK LLEAGLSRVV AKKSEVIMNE ISHLQEKELK LKEENDKLRQ ELLIISDARK  180
QTIRDSDDYD ESSECTNICN SADPPQEYES SGTSLRLPYS G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-64MIKC_MADS family protein