PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc013340.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 230aa    MW: 26670.8 Da    PI: 7.9794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc013340.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161562148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg W+++Ed++l d++  +G g+W++I+ + g+ R +k+c++rw +yl
  Cse_sc013340.1_g050.1 15 RGLWSPDEDKKLRDYIMNHGLGCWSSIPIHAGLQRNGKSCRLRWINYL 62
                           788*******************************************97 PP
2Myb_DNA-binding48.12.7e-1568113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            r+ +T  Ed++++ ++ +lG++ W+ I+++++ gRt++++k+rw++yl
  Cse_sc013340.1_g050.1  68 RDTFTFHEDDIILTLHGMLGNK-WSQISQHLP-GRTDNEIKNRWHSYL 113
                            7899******************.*********.************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MRFSPSEKPK LKHKRGLWSP DEDKKLRDYI MNHGLGCWSS IPIHAGLQRN GKSCRLRWIN  60
YLRPGLKRDT FTFHEDDIIL TLHGMLGNKW SQISQHLPGR TDNEIKNRWH SYLKKKVHKQ  120
TDSSLESSEA YGCGKLPKIL FDDWLSHNQF QNFGTSSHSL VSTGACHYDF GSQTTVMNNI  180
QEASSYSFAD SVDHLQLNYV HQHVESNFYD IISDDNTCQN FNNIDVAYYL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-55MYB family protein