PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc013521.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB_related
Protein Properties Length: 604aa    MW: 67998.7 Da    PI: 9.7818
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc013521.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07503552147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                            r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Cse_sc013521.1_g040.1 503 RRPFSVSEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 552
                            678999********************9988889**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    
MVLQKRLEYG FNGYQVPPTP RAARSATRRV PFWKKTDDNN NNKNNKSICA FDMLATVAGE  60
LLQEGGDKSS GEEPETKTEH ETVENDPSNV NNICDQGSSN RSFFVSEIIS QAPIIQDSYT  120
SGITVSECNE KPNVLSADKV KVKVPFSCKV DEKNSRSITN EAPKPLAVVH KIDNNNVNLV  180
VRDNDDDENS FGVTRTPDKN FKSPPRIGDR RIKRFLASKY WKPAPKLNDE VHCDADIQHD  240
SKPCFKRQRS LKDYPFKKRR LYEQLDDFSN SDVIDDEDRP NTPQKAIESG SHLSLKSGGG  300
KTTSGFISKQ NPAFQQRDSD VKLKIRSFRV PELFFELPKT STVGTLKRTV MDALTSMLSG  360
ELHVGVMLQG KKIRDDDKTL LQTGIHNKVD SLGFTLEPNE PHIDQSFPPT PMPKPSIRYS  420
PAPNVSNKLV VRREVSDVFP DPPMTNLGGS VESEHDSAPS PPHLSLGNKS GSDSRALVTV  480
PRALSVVPFR KCKRSEVAQR RIRRPFSVSE VEALVQAVEK LGTGRWRDVK LRAFDNAKHR  540
TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLAAH AYWSHHQAKQ QFKHPSQPET  600
CRLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246261KRQRSLKDYPFKKRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-128MYB_related family protein