PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013565.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 412aa MW: 47517.7 Da PI: 9.7955

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013565.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.1	1.6e-16	209	260	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Cse_sc013565.1_g050.1 209 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 260 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence
MHSCTFNKNK HYEKHNRRIY KKNIMALIAV KTEENSLRRS INTVDNEASE PRRVKRRKRD 60 LTLDCKRQQL LLSQPTDQAS PTTVKRSSKF RGVSKHRWTG RYEAHLWDKL SWNVTQKKKG 120 KQGNAILLFR FYFLMSFSAR TPDLRAYDEE ESAARAYDLA ALKYWGSSTF TNFPVTDYAK 180 EIEIMQTVTK EEYLATLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 240 YSTQEEAARA YDIAAIEYRG VNAVTNFDLS TYIRWLKPGP QTPAACEEPQ TQRVLPVMPF 300 NNFGMVDEPV QPFLNYNNSI MVETSLPQKQ EVPETNFPFS PTTKSSPTAL GLLFQSSIFR 360 DLVQKNLNCS DEEDDAEDKK CQPQMVNGEV YNGVFYGTGD NFPFMVSPGY NL

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence

MHSCTFNKNK HYEKHNRRIY KKNIMALIAV KTEENSLRRS INTVDNEASE PRRVKRRKRD  60
LTLDCKRQQL LLSQPTDQAS PTTVKRSSKF RGVSKHRWTG RYEAHLWDKL SWNVTQKKKG  120
KQGNAILLFR FYFLMSFSAR TPDLRAYDEE ESAARAYDLA ALKYWGSSTF TNFPVTDYAK  180
EIEIMQTVTK EEYLATLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT  240
YSTQEEAARA YDIAAIEYRG VNAVTNFDLS TYIRWLKPGP QTPAACEEPQ TQRVLPVMPF  300
NNFGMVDEPV QPFLNYNNSI MVETSLPQKQ EVPETNFPFS PTTKSSPTAL GLLFQSSIFR  360
DLVQKNLNCS DEEDDAEDKK CQPQMVNGEV YNGVFYGTGD NFPFMVSPGY NL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	60	RRVKRRKRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	7e-88	AP2 family protein