PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013652.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 308aa MW: 32848.2 Da PI: 9.8833

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013652.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.4	1e-07	104	129	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + C++Gd+C++aHg+ Cse_sc013652.1_g040.1 104 KSRLCSKYNTAEGCRFGDKCHYAHGE 129 679*********************96 PP
2	zf-CCCH	32.8	1.2e-10	275	299	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +Gd+C+FaHg Cse_sc013652.1_g040.1 275 FKTKLCENFTK-GSCTFGDKCHFAHG 299 69*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MDFGFNKKRG RPDAGANGNT GFKKSKQDTE SFQSGLGSKS KPCTKFFSTS GCPFGEGCHF 60 LHCVPGGFKA INPMSGGNPS LPPTVRNPVI PPSFPDGSSP PAVKSRLCSK YNTAEGCRFG 120 DKCHYAHGEW ELGKPTVPSH HEDPRSMGPP PGNRFSGGPR MGFNPPQEIA PAGFGASATT 180 KISVNAALGG PIIGKNGINS KQICRMTGVK LSVRDHESDP NLKNIELEGT FDQIKRASEM 240 VQQLIVNLTA AAGPHQHVFS KPFGPPPKPP GRRNFKTKLC ENFTKGSCTF GDKCHFAHGA 300 EELRSSGV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	2e-52	C3H family protein