PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc013928.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 252aa MW: 28981.3 Da PI: 6.5135

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc013928.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l+ +++ +G ++W+ ++ g+ R++k+c++rw +yl Cse_sc013928.1_g030.1 14 RGAWSEDEDSKLKAYIETYGHRNWRELPKLAGLSRCGKSCRLRWVNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54	4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T eE++l++++++ +Gg+ W+ Ia++++ gR+++++k++w+++l Cse_sc013928.1_g030.1 67 RGNYTSEEEDLIINLHRDFGGK-WSMIAKELP-GRSDNEIKNHWHTHL 112 899*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MVRAPYFDKN GTKRGAWSED EDSKLKAYIE TYGHRNWREL PKLAGLSRCG KSCRLRWVNY 60 LRPNVKRGNY TSEEEDLIIN LHRDFGGKWS MIAKELPGRS DNEIKNHWHT HLRKRAAQIN 120 YLSFPENKSA QNLESHEDNS MSKLSHLKEE DRVDISLAAE SVRILSAEYI KSSSSSSSSD 180 SCYVGSNSDS SLSSEVKPFE DSLMKPHMAD TFSNTSYDWT SIMDLVNRPF LPSTDHDMLM 240 VDDFLWSGVE HF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	1e-56	MYB family protein