PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014205.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 206aa MW: 24027.2 Da PI: 5.5178

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014205.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.2	7.7e-20	54	106	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++t+eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Cse_sc014205.1_g010.1 54 KRKLTDEQVTLLEQNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWK 106 4589************************************************9 PP
2	HD-ZIP_I/II	120.1	1.2e-38	53	144	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kr+l++eqv+lLE++F e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e Cse_sc014205.1_g010.1 53 RKRKLTDEQVTLLEQNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKNEHDSTVLEKCRLETEVLRLKE 140 8*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 +l+e Cse_sc014205.1_g010.1 141 QLSE 144 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence
MTTNMKTQVD DQMVLLSQYY PGIYDQLIPE QGEVVKPRRR RKKSKADGSS SMRKRKLTDE 60 QVTLLEQNFG DEHKLESERK DRLASELGLD PRQVAVWFQN RRARWKSKKL EEEYSKLKNE 120 HDSTVLEKCR LETEVLRLKE QLSEAEKEMN RLVERSDGIS STSPSSSFSM EAMEPPFLGG 180 FGMEGLENVF YLPENNYIQG LDWLNI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	38	56	RRRRKKSKADGSSSMRKRK
2	39	57	RRRRKKSKADGSSSMRKRK
3	40	58	RRRRKKSKADGSSSMRKRK
4	41	59	RRRRKKSKADGSSSMRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-58	HD-ZIP family protein