PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014322.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 1418aa MW: 154942 Da PI: 8.2278

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014322.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.6	7.1e-06	1171	1190	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C fa+ G C++Gd Ck+ H Cse_sc014322.1_g010.1 1171 PCWSFAK-GSCRFGDACKYLH 1190 677899.************ PP

Sequence ? help Back to Top
Protein Sequence Length: 1418 aa Download sequence
MMSEKEQSPI YDIKLSVALP GIMSGCNAAQ ELAALDLAMK LHYIRVVYYF KTPTFDGLTI 60 SNIKETMYSW LIHAYLPCGR IRRTESGRPF IKCNDSGVRL IEAKCRLSLD EWLGSRDDSR 120 HKLVVPNPVL GPELVFSPLV MIQLTDFKCG GKSVGLSWSH VLGDAFSAVG FMDLWSQVFA 180 GHYPAQSLTM AQQQTPAHDI QSSYPSPDPL SVKRVGPVGD LWSTSIKSKM ETVSFHISTS 240 ELIQLQAKIC QGKQIPVFEC ICVAIWQSLA KVRDGLGPKV VTICKSNLKN RSKGIMTNKS 300 QTINVVKTDI SAIKYEPLKL GRLIMNNSED ERMKIEEAMG KNDEIPDFLF YGANLTFVDL 360 SETSFYGMEV RGQKPAYVNC VIENIGDEGV VLVLPAPKND GRIVSITLSE DEVAKLRPLV 420 LVIYVVLFEN DDEGLDVNPS LSIIVVVLHK TPKQPIDWYL LMCYEDAPRA NCGHMNKVLT 480 QSHNLCLLSP TPSFHVSPTT AAPSTSPSSD PSPQPADDAE WIKIDFIIRS WIFSTLSPSP 540 RKRLVDLNPK TAKAAWTHLA AIFQDNKRPR AMALKAELRN LKLGALSING YFQKIESIVS 600 VLNGVGSPLS NDDVVTFALE GLPSTYETIS TVIVSREPFS DLQTVRSLLT THKMRLKCRV 660 QDPLVDATST SPMVLVAKTN TTPQRGTSLE KGVARSDLDM LQTLLAKFGL NATNCFTSNP 720 PVAYTVSQPH GLPFVSAHLA SQPTSVGPPQ YLPGSIGGGS HIGMAGFFPH RVQQQPGPSA 780 PPVHFTSGGQ QQPGVYDRGS TAATGSTARG SFPSNSTVGV RFIRFGILPH AFNTTTLQDL 840 ASGNWNMDPG RLIMNNSTDE RMKIEEAMGK YEELPDFLIY AANLTFVDLS ETSFYGMEVR 900 GQRPVYVNCV IDNIGDEGVV LVLPAPKNDG RILVLVIYLV LFENDDEGLD VNPSLSIIVA 960 VLLLSPTPSF HVSPTTAAPS TSPSPDPSPQ PADDAEWIKI DFIIRSWIFS TLAPSPRKRL 1020 VDLNPKTAKA AWTHLAAIFQ DNKRPRAMAL KAELRNLKLG ALSINGYFQK IESIVSVLNG 1080 VGSPLSNDDV VTFALEVLPS TYETISTVIV SREPFSDLQT VRSLLTTHEM RLKCRFQDPL 1140 VDATSASPMV LVAKTNTTPQ RGTSLEKVNN PCWSFAKGSC RFGDACKYLH NGVHGKSTLL 1200 PHTSGSSSGM QGVARSDLDM LQTLLAKFGL NATNCFTSNP PVAYTVSQPH GLPFVSAHLA 1260 SQPTTAWTLS APNSLHVRGS TAATGSTARG SFPSNSTVGV RFIRFGILPH AFNTTTLQDP 1320 ASGNWNMDTW PALAMGDAGD VWRSLAKVRD GLGPRVVTIC KRNLKNHPKG IITNKSQTIN 1380 VVKTDMSAIK YEPLKLGRLI MNNSEDERMK IEEAMGKK

Sequence ? help Back to Top

Protein Sequence Length: 1418 aa Download sequence

MMSEKEQSPI YDIKLSVALP GIMSGCNAAQ ELAALDLAMK LHYIRVVYYF KTPTFDGLTI  60
SNIKETMYSW LIHAYLPCGR IRRTESGRPF IKCNDSGVRL IEAKCRLSLD EWLGSRDDSR  120
HKLVVPNPVL GPELVFSPLV MIQLTDFKCG GKSVGLSWSH VLGDAFSAVG FMDLWSQVFA  180
GHYPAQSLTM AQQQTPAHDI QSSYPSPDPL SVKRVGPVGD LWSTSIKSKM ETVSFHISTS  240
ELIQLQAKIC QGKQIPVFEC ICVAIWQSLA KVRDGLGPKV VTICKSNLKN RSKGIMTNKS  300
QTINVVKTDI SAIKYEPLKL GRLIMNNSED ERMKIEEAMG KNDEIPDFLF YGANLTFVDL  360
SETSFYGMEV RGQKPAYVNC VIENIGDEGV VLVLPAPKND GRIVSITLSE DEVAKLRPLV  420
LVIYVVLFEN DDEGLDVNPS LSIIVVVLHK TPKQPIDWYL LMCYEDAPRA NCGHMNKVLT  480
QSHNLCLLSP TPSFHVSPTT AAPSTSPSSD PSPQPADDAE WIKIDFIIRS WIFSTLSPSP  540
RKRLVDLNPK TAKAAWTHLA AIFQDNKRPR AMALKAELRN LKLGALSING YFQKIESIVS  600
VLNGVGSPLS NDDVVTFALE GLPSTYETIS TVIVSREPFS DLQTVRSLLT THKMRLKCRV  660
QDPLVDATST SPMVLVAKTN TTPQRGTSLE KGVARSDLDM LQTLLAKFGL NATNCFTSNP  720
PVAYTVSQPH GLPFVSAHLA SQPTSVGPPQ YLPGSIGGGS HIGMAGFFPH RVQQQPGPSA  780
PPVHFTSGGQ QQPGVYDRGS TAATGSTARG SFPSNSTVGV RFIRFGILPH AFNTTTLQDL  840
ASGNWNMDPG RLIMNNSTDE RMKIEEAMGK YEELPDFLIY AANLTFVDLS ETSFYGMEVR  900
GQRPVYVNCV IDNIGDEGVV LVLPAPKNDG RILVLVIYLV LFENDDEGLD VNPSLSIIVA  960
VLLLSPTPSF HVSPTTAAPS TSPSPDPSPQ PADDAEWIKI DFIIRSWIFS TLAPSPRKRL  1020
VDLNPKTAKA AWTHLAAIFQ DNKRPRAMAL KAELRNLKLG ALSINGYFQK IESIVSVLNG  1080
VGSPLSNDDV VTFALEVLPS TYETISTVIV SREPFSDLQT VRSLLTTHEM RLKCRFQDPL  1140
VDATSASPMV LVAKTNTTPQ RGTSLEKVNN PCWSFAKGSC RFGDACKYLH NGVHGKSTLL  1200
PHTSGSSSGM QGVARSDLDM LQTLLAKFGL NATNCFTSNP PVAYTVSQPH GLPFVSAHLA  1260
SQPTTAWTLS APNSLHVRGS TAATGSTARG SFPSNSTVGV RFIRFGILPH AFNTTTLQDP  1320
ASGNWNMDTW PALAMGDAGD VWRSLAKVRD GLGPRVVTIC KRNLKNHPKG IITNKSQTIN  1380
VVKTDMSAIK YEPLKLGRLI MNNSEDERMK IEEAMGKK