PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014421.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ARF

Protein Properties

Length: 824aa MW: 90976.2 Da PI: 4.8693

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014421.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.3	7.9e-25	143	244	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+ltpsd++++g +++p++ ae+ ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++Lk+gD v+F Cse_sc014421.1_g050.1 143 FCKTLTPSDTSTHGGFSVPRRAAEKLfpqldfSMQPPT-QELIVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLKAGDAVLF 229 99*******************999*9555544.49********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++ +l+++v+r+ Cse_sc014421.1_g050.1 230 I--RDEKSQLLLGVRRA 244 *..45677789999997 PP
2	Auxin_resp	25.4	6.1e-10	286	311	58	83
Auxin_resp 58 rlsGtvvgvsdldpvrWpnSkWrsLk 83 r++Gt+vg+sd+dp+rWp+SkW +L+ Cse_sc014421.1_g050.1 286 RYMGTIVGISDVDPLRWPGSKWHNLQ 311 68*********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 824 aa Download sequence
MSTIEEKLNS TGGTHSLLEE MKLLKEMQDH SVIKKPINSE LWHACAGPLV TLPQVGSLVY 60 YFPQGHSEQV AVSTNRTATS QVPNYPNLPS QLLCQVLNAT LHADKETDEI YAQMSLRPVN 120 SEKDVLPIPD FGMKPSRHPS EFFCKTLTPS DTSTHGGFSV PRRAAEKLFP QLDFSMQPPT 180 QELIVRDLHD NTWTFRHIYR GQPKRHLLTT GWSMFVGAKR LKAGDAVLFI RDEKSQLLLG 240 VRRANRQQTS LPSSVLSADS MHIGVLAAAA HAAANRSPFT IFYNPRYMGT IVGISDVDPL 300 RWPGSKWHNL QVEWDEPGCG DKQSRVSPWD IEAPESLFIF PSLTSSLKRP FNSTFLGAQP 360 EWDNMVNRPF MRAPDTINGN YSNASMSTLW SEQLMKMLMK PQNSNNTTTS ISPVVQETFA 420 ANNRNQLLQA ENRPQFNLIQ PSTSNVTSNS SPQSNANLSG NQQPQQKPVN QTLVSSTSET 480 VKSESKPVNS PQNPANELPF LNQLSPFDSS ILNGQQFDSP QIDSSTLNGL FPYPETNVMN 540 PYPSLGQETW DPQVNNNSKS FFQPNTCPSN VYGFKDLSDD NHNNQSGNVY NCLNFEGSNG 600 GGSTVVDPSV SSTVLDEFCN LKDIEFQNPS NYLVSNNFSS SQDVQSQITS ASGLVDSQAY 660 SMQELPDNSG GASSSNGEFD DSGLLQNNSW QQVAAPARVR TYTKIQKAGS VGRSIDVSSF 720 KTYEELCSEI EKMFGLEGLL NDSRGSGWKL VYVDFENDVL LVGDDPWEEF VGCVRCIRIL 780 SPSEVQQMGE EGMQLLNSNA ALQAGINACP TTSENGPRTW VGPT

Sequence ? help Back to Top

Protein Sequence Length: 824 aa Download sequence

MSTIEEKLNS TGGTHSLLEE MKLLKEMQDH SVIKKPINSE LWHACAGPLV TLPQVGSLVY  60
YFPQGHSEQV AVSTNRTATS QVPNYPNLPS QLLCQVLNAT LHADKETDEI YAQMSLRPVN  120
SEKDVLPIPD FGMKPSRHPS EFFCKTLTPS DTSTHGGFSV PRRAAEKLFP QLDFSMQPPT  180
QELIVRDLHD NTWTFRHIYR GQPKRHLLTT GWSMFVGAKR LKAGDAVLFI RDEKSQLLLG  240
VRRANRQQTS LPSSVLSADS MHIGVLAAAA HAAANRSPFT IFYNPRYMGT IVGISDVDPL  300
RWPGSKWHNL QVEWDEPGCG DKQSRVSPWD IEAPESLFIF PSLTSSLKRP FNSTFLGAQP  360
EWDNMVNRPF MRAPDTINGN YSNASMSTLW SEQLMKMLMK PQNSNNTTTS ISPVVQETFA  420
ANNRNQLLQA ENRPQFNLIQ PSTSNVTSNS SPQSNANLSG NQQPQQKPVN QTLVSSTSET  480
VKSESKPVNS PQNPANELPF LNQLSPFDSS ILNGQQFDSP QIDSSTLNGL FPYPETNVMN  540
PYPSLGQETW DPQVNNNSKS FFQPNTCPSN VYGFKDLSDD NHNNQSGNVY NCLNFEGSNG  600
GGSTVVDPSV SSTVLDEFCN LKDIEFQNPS NYLVSNNFSS SQDVQSQITS ASGLVDSQAY  660
SMQELPDNSG GASSSNGEFD DSGLLQNNSW QQVAAPARVR TYTKIQKAGS VGRSIDVSSF  720
KTYEELCSEI EKMFGLEGLL NDSRGSGWKL VYVDFENDVL LVGDDPWEEF VGCVRCIRIL  780
SPSEVQQMGE EGMQLLNSNA ALQAGINACP TTSENGPRTW VGPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19850.1	0.0	ARF family protein