PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014720.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MIKC_MADS

Protein Properties

Length: 143aa MW: 16675 Da PI: 9.0013

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014720.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.5	3.7e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skR+ngi+KKA+E+ vLCd +v+++i++s+gk+yey+s Cse_sc014720.1_g030.1 9 KRIENTSNRQVTYSKRKNGIIKKAKEITVLCDSNVSLVIYGSSGKMYEYCS 59 79***********************************************96 PP
2	K-box	78.6	1.6e-26	71	142	1	72
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 yq+ sg++l++ak+e+lq+e++++kke+e++q e+Rhl+Ge+++sL+++eL + e++Le++l++iR+kK + Cse_sc014720.1_g030.1 71 YQRLSGNKLWDAKHENLQNEIDRIKKENESMQIELRHLKGEEITSLNYEELINYEDALENGLTNIREKKASF 142 7899*****************************************************************865 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MGRGKIEIKR IENTSNRQVT YSKRKNGIIK KAKEITVLCD SNVSLVIYGS SGKMYEYCSP 60 KTNLIDMLDR YQRLSGNKLW DAKHENLQNE IDRIKKENES MQIELRHLKG EEITSLNYEE 120 LINYEDALEN GLTNIREKKA SFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-68	MIKC_MADS family protein