PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc014804.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 464aa MW: 52450.9 Da PI: 5.2384

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc014804.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.1	4.1e-13	413	462	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 + rWT E++ l +v+++G+g+Wk+I ++ + Rt+ ++k++w+++ Cse_sc014804.1_g040.1 413 KRRWTVVEEDALRTGVHKYGKGNWKLILSMYRdifEDRTEVDLKDKWRNL 462 579*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MDPDISGWIL EFLLRQNTLD DETLNNLIHI LPIPNTNPRL KKALILRKIE SDIKTGTIAD 60 HTIDYLESII ELDITEHVYK PSEALKVAYC TIAMHCTMNS IENDDIEAKC DEVKRVWSER 120 VREMEGSDNV RDEMLSWVKD IEARIMEVDV CENVLAVFKE LDSVEVLSRY VNEAWELMGP 180 SFIEVACETV LGDRGLSKEL GLDGGLSSRD VDGADVHSEG NEASRARVLP KNKQISHISH 240 GRLGTHRGAK IVDPMETSHD QYDGIPTPEV DRVKEALEKS SSELHAVVKD PLPEALRYAE 300 SLNVNTSGEN MARDHGVGGS TRNNDEVPSS SHDRKGKALE ADGGEGLRGD QNERRKPSLM 360 ERNSTAHTVE WSDSIDTSDE GSPTRPHLNT PKKRTVSPLS IYNINKLARQ RKKRRWTVVE 420 EDALRTGVHK YGKGNWKLIL SMYRDIFEDR TEVDLKDKWR NLTR

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MDPDISGWIL EFLLRQNTLD DETLNNLIHI LPIPNTNPRL KKALILRKIE SDIKTGTIAD  60
HTIDYLESII ELDITEHVYK PSEALKVAYC TIAMHCTMNS IENDDIEAKC DEVKRVWSER  120
VREMEGSDNV RDEMLSWVKD IEARIMEVDV CENVLAVFKE LDSVEVLSRY VNEAWELMGP  180
SFIEVACETV LGDRGLSKEL GLDGGLSSRD VDGADVHSEG NEASRARVLP KNKQISHISH  240
GRLGTHRGAK IVDPMETSHD QYDGIPTPEV DRVKEALEKS SSELHAVVKD PLPEALRYAE  300
SLNVNTSGEN MARDHGVGGS TRNNDEVPSS SHDRKGKALE ADGGEGLRGD QNERRKPSLM  360
ERNSTAHTVE WSDSIDTSDE GSPTRPHLNT PKKRTVSPLS IYNINKLARQ RKKRRWTVVE  420
EDALRTGVHK YGKGNWKLIL SMYRDIFEDR TEVDLKDKWR NLTR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	392	414	KKRTVSPLSIYNINKLARQRKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	4e-22	MYB_related family protein