PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015222.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18105 Da    PI: 9.4639
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015222.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.7e-11647344
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                             n+s r+  + +R +g+ KK +ELS+LC++e++ i++ +++
  Cse_sc015222.1_g020.1  6 MTNDSARKSCYKRRMQGMKKKLSELSILCGIEACAIVYRPNN 47
                           6799*********************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MKLAFMTNDS ARKSCYKRRM QGMKKKLSEL SILCGIEACA IVYRPNNPQA EVWPNSTGVY  60
NVLAQFLRTP EINRFRNMVT QEGYIRERVN KADRELKKQI KKNQKQEMTE MMYQCLIGDT  120
PLDSLCMKNL NDLGSLVDQT LSEIDSRIES LKKADTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-45M-type_MADS family protein