PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc015617.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 380aa MW: 41946.2 Da PI: 8.5907

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc015617.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.9e-11	14	39	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Cse_sc015617.1_g010.1 14 GEPDCSYYIRTGLCRFGATCRFNHPP 39 6899********************97 PP
2	zf-CCCH	39.1	1.3e-12	60	84	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Cse_sc015617.1_g010.1 60 QPECQYYLKTGTCKFGATCKFHHPR 84 799********************96 PP
3	zf-CCCH	37.1	5.5e-12	107	130	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Cse_sc015617.1_g010.1 107 AECAYYLRTGQCKFGSTCKFHHPQ 130 79********************97 PP
4	zf-CCCH	38.1	2.5e-12	261	287	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ C+F+H++ Cse_sc015617.1_g010.1 261 PGQPECQFYMKTGDCKFGAVCRFHHPR 287 5789*********************96 PP
5	zf-CCCH	40.4	4.9e-13	307	333	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Cse_sc015617.1_g010.1 307 PGEPLCIFYSRYGICKFGPSCKFDHPM 333 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MEVMEAGPYP VREGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATAKM RGEYPERAGQ 60 PECQYYLKTG TCKFGATCKF HHPRDKAGIA GRVSLNVLGY PLRTNEAECA YYLRTGQCKF 120 GSTCKFHHPQ PSNMMVSYRG SPAYPTVQSP TSPGQQSYPG GITNWSLSRA SFISPRWQAP 180 SNYAPMILPQ GVVSVPGWSA YGGQLGSISS SESQQQTGGN SQIYGTSRQS DGNNEAIQGT 240 YPSYRTGFYA MPSENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERM IPVPDCVLSP 300 MGLPLRPGEP LCIFYSRYGI CKFGPSCKFD HPMGVFAYNF SPSTSADASN VRRLIGSSST 360 NMSPERRQIP TSDDNIDTEG

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MEVMEAGPYP VREGEPDCSY YIRTGLCRFG ATCRFNHPPN RKLAIATAKM RGEYPERAGQ  60
PECQYYLKTG TCKFGATCKF HHPRDKAGIA GRVSLNVLGY PLRTNEAECA YYLRTGQCKF  120
GSTCKFHHPQ PSNMMVSYRG SPAYPTVQSP TSPGQQSYPG GITNWSLSRA SFISPRWQAP  180
SNYAPMILPQ GVVSVPGWSA YGGQLGSISS SESQQQTGGN SQIYGTSRQS DGNNEAIQGT  240
YPSYRTGFYA MPSENVFPER PGQPECQFYM KTGDCKFGAV CRFHHPRERM IPVPDCVLSP  300
MGLPLRPGEP LCIFYSRYGI CKFGPSCKFD HPMGVFAYNF SPSTSADASN VRRLIGSSST  360
NMSPERRQIP TSDDNIDTEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-168	C3H family protein