PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015618.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 29060.9 Da    PI: 8.5831
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015618.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.6e-30958150
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           krienk+nrqvtfskRrng+lKKA+ELSvLCdaev +iifss++klye+ 
  Cse_sc015618.1_g010.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVGLIIFSSRDKLYEFG 58
                           79**********************************************95 PP
2K-box100.42.5e-3380169998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            ++e++++s++qe++kLk++ e+Lqr+qRhllGedL++Ls+keL++Le+qLe +l++ R++K+++l+eq+eel+ ke+el + nk L+ 
  Cse_sc015618.1_g010.1  80 NNERETQSWYQEVSKLKAKFESLQRTQRHLLGEDLGPLSVKELHNLEKQLEGALTQARQRKTQILVEQMEELRCKERELGDMNKHLKI 167
                            67889*********************************************************************************98 PP

                  K-box  97 kl 98 
                            k+
  Cse_sc015618.1_g010.1 168 KV 169
                            87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVGLIIFSS RDKLYEFGSV  60
GVMKTLERYQ RCCFNPQDNN NERETQSWYQ EVSKLKAKFE SLQRTQRHLL GEDLGPLSVK  120
ELHNLEKQLE GALTQARQRK TQILVEQMEE LRCKERELGD MNKHLKIKVS HELSTFETEG  180
QGYRTHQLPC PWNSSNNNTF LMHPSQSNPM DCQQEQPILQ IGYNQFMQGE GSSGQRNMVG  240
ETNIHGNWVI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-103MIKC_MADS family protein