PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015687.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 582aa    MW: 66736.4 Da    PI: 6.4022
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015687.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.52.2e-1132095801374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            l++lL++cA+a+++ +++ a ++L++++++++++gd+++Rla+yf+ A++ar+a+++ e+y+  + ++ s    ++ l+a++ +  v+
  Cse_sc015687.1_g020.1 209 LRDLLIQCAQAITNYNHSSAYEVLKKIKQHCNQHGDSTERLAHYFVMAIEARVAGTGAEVYREASLKKIS---CAQILKAYHSYLMVC 293
                            6899*********************************************************999999998...9************** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174
                            P++++s+++aN  I + + g++++HiiDf+i +G+QWp+L++aL+ Rp+gpp+l+iTg++ p++g   ++++eetg+r+ak++++++v
  Cse_sc015687.1_g020.1 294 PFHRVSNILANGSINRLARGKDKLHIIDFGILYGFQWPCLIKALSMRPGGPPMLQITGIDLPQPGfrPADRVEETGRRIAKYCKRFNV 381
                            ****************************************************************9*********************** PP

                   GRAS 175 pfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            pf++n  +ak+++++++eeL+++++E ++Vn+v +l ++lde+v  +s+rd+vL+l+++++P+++v+   +  +n++ +l+rf eal 
  Cse_sc015687.1_g020.1 382 PFKYNG-IAKKWDEIRIEELNLDRNELTVVNSVNRLRNILDETVIESSPRDTVLQLIRQINPDMFVLGILNGAYNAPFLLNRFREALF 468
                            ******.7******************************************************************************** PP

                   GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                            ++s+lfd ++++ pr+se+r+ +E+el+grei+nvvaceg+ r er et+++W++r+ +aGFk+vp   + a+++k+ +r  + + + 
  Cse_sc015687.1_g020.1 469 HFSTLFDIFDSTSPRDSEHRALYEQELFGREIMNVVACEGTTRMERPETYRQWQSRVVRAGFKQVPQYRDKAEEVKSKVRSNYHKDFL 556
                            ***********************************************************************************888** PP

                   GRAS 351 veeesgslvlgWkdrpLvsvSaWr 374
                            v+e+ ++l++gWk+r L+++S W+
  Cse_sc015687.1_g020.1 557 VDEDGKWLLQGWKGRVLYACSLWK 580
                            ***********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MDTLYATAMN NYINSYNHHT AQSPFDPTNI NLQEFDPKTN DPTPEFSQEQ SSYGDCLGEQ  60
DHYDSVLKYL NQMLMEEDDL QAKPCMYNEC MALQAEAAYY NVLVNKQPVA SPDYSGGTGT  120
LTSDESSNNF SIANCNLNYS RKRSPVQEGE RETKMAMTSD LESDQAEQDD EDLLLYEHEP  180
QPKSMNEGSK RGRPRGKKNA ITQDLVVDLR DLLIQCAQAI TNYNHSSAYE VLKKIKQHCN  240
QHGDSTERLA HYFVMAIEAR VAGTGAEVYR EASLKKISCA QILKAYHSYL MVCPFHRVSN  300
ILANGSINRL ARGKDKLHII DFGILYGFQW PCLIKALSMR PGGPPMLQIT GIDLPQPGFR  360
PADRVEETGR RIAKYCKRFN VPFKYNGIAK KWDEIRIEEL NLDRNELTVV NSVNRLRNIL  420
DETVIESSPR DTVLQLIRQI NPDMFVLGIL NGAYNAPFLL NRFREALFHF STLFDIFDST  480
SPRDSEHRAL YEQELFGREI MNVVACEGTT RMERPETYRQ WQSRVVRAGF KQVPQYRDKA  540
EEVKSKVRSN YHKDFLVDED GKWLLQGWKG RVLYACSLWK PA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232237LKKIKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-161GRAS family protein