PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc015860.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 278aa    MW: 31655.2 Da    PI: 5.2414
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc015860.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-1867120356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Cse_sc015860.1_g020.1  67 KKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWK 120
                            4557899**********************************************9 PP
2HD-ZIP_I/II128.42.9e-4166156191
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqvk+LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++++k++n++L++ +++L+
  Cse_sc015860.1_g020.1  66 EKKRRLNLEQVKALEKSFELGNKLEPERKTQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFESVKADNDALKNLNKKLH 153
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eel 91 
                            +el
  Cse_sc015860.1_g020.1 154 AEL 156
                            998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MSFLPPEPMF FGYEDDHHPP HEQYQGVGTL LMRRSMSYSG MDRCEETRGN AADEDLSEDD  60
GSQLGEKKRR LNLEQVKALE KSFELGNKLE PERKTQLARA LGLQPRQVAI WFQNRRARWK  120
TKQLEKDYDV LKRQFESVKA DNDALKNLNK KLHAELLAVK GGESNGVRPI NLNKETEGSW  180
SNGSENSCDL NTVTGTMTPS EESPIFYTQI SNNMYPNMSS IGPNSSLTQL LQNQATTDLL  240
SQRLNQSVGN EGFCNMFNGI EDQPSFWPWP EQHSQHLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-72HD-ZIP family protein