PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016230.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 519aa MW: 60152.8 Da PI: 7.8125

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016230.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0014	398	420	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F ++ L H++ H Cse_sc016230.1_g020.1 398 YTCNFCKRKFYSSQALGGHQNAH 420 9******************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MPYAMRLKDD ELSLLKELSE YSVPPRNILS TIKGRNPDNV SSVRTIYNAL DKLRRARVGD 60 RTQIQVLYAH LTDSGYAYYP RVNDNNELEE LFFVHPTSNA LWRTFPEIML MDSTYNTTQF 120 RLPLLEIVGV TPTNKTFSMA YSFIHGEKGH NFQWVLQRIK DVIDERYYPR VIVTDRDLAL 180 VGACKAEFPT ARKLLCRWHI EQNLMRFMRN RCGGLDEYDS IKKRWDRLVK APTRPLFEQQ 240 YERLRQRLVN LERLPIPLEE LNIFWRTLHV PWPNINRPPP EDGSSSNDDD DDDDTSFRDD 300 IRQFRNVFTK ASSEQNMVKT PPEDNGRGTG CGTRNQSAAS MEQEAREAKS TYDKGYNSDL 360 FDILEREYEE GRFADAKSPY DEGQNLAGSS PSRPMKVYTC NFCKRKFYSS QALGGHQNAH 420 KRERDAARRN LSIDLPMNFM VNRSLGVQAH LLPPKPSRYE ETTISGFVND DARYGVTLVN 480 PYAEEETLEL RRRRGFYIGA PTPCQPSAGQ HMLDLNLKL

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MPYAMRLKDD ELSLLKELSE YSVPPRNILS TIKGRNPDNV SSVRTIYNAL DKLRRARVGD  60
RTQIQVLYAH LTDSGYAYYP RVNDNNELEE LFFVHPTSNA LWRTFPEIML MDSTYNTTQF  120
RLPLLEIVGV TPTNKTFSMA YSFIHGEKGH NFQWVLQRIK DVIDERYYPR VIVTDRDLAL  180
VGACKAEFPT ARKLLCRWHI EQNLMRFMRN RCGGLDEYDS IKKRWDRLVK APTRPLFEQQ  240
YERLRQRLVN LERLPIPLEE LNIFWRTLHV PWPNINRPPP EDGSSSNDDD DDDDTSFRDD  300
IRQFRNVFTK ASSEQNMVKT PPEDNGRGTG CGTRNQSAAS MEQEAREAKS TYDKGYNSDL  360
FDILEREYEE GRFADAKSPY DEGQNLAGSS PSRPMKVYTC NFCKRKFYSS QALGGHQNAH  420
KRERDAARRN LSIDLPMNFM VNRSLGVQAH LLPPKPSRYE ETTISGFVND DARYGVTLVN  480
PYAEEETLEL RRRRGFYIGA PTPCQPSAGQ HMLDLNLKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	5e-17	C2H2 family protein