PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc016675.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 29423 Da    PI: 5.2963
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc016675.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.5e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k+ien s rqvtfskRr+g+lKKA+ELSvLCdaev +i+fs+tg+lye++s
  Cse_sc016675.1_g050.1  9 KKIENVSTRQVTFSKRRAGLLKKAHELSVLCDAEVGIIVFSNTGRLYEFCS 59
                           68***********************************************96 PP
2K-box60.75.7e-21811691199
                  K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            + ++ + q el+ L++e+  L++e+ +l G +L+  s++eL+qLeqqL+++l ++++kK+ +l+e+i+++ +ke+el  en+ Lr ++
  Cse_sc016675.1_g050.1  81 QVEMRQEQAELEHLRNEVARLRNENARLTGSNLNGASVQELHQLEQQLNDGLISVKEKKDAMLFEEIDRSNHKERELGFENNVLRGEI 168
                            45678899****************************************************************************9988 PP

                  K-box  99 e 99 
                            e
  Cse_sc016675.1_g050.1 169 E 169
                            6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MGRGKIEIKK IENVSTRQVT FSKRRAGLLK KAHELSVLCD AEVGIIVFSN TGRLYEFCST  60
SMRGIIDRYN VATEPSTSQL QVEMRQEQAE LEHLRNEVAR LRNENARLTG SNLNGASVQE  120
LHQLEQQLND GLISVKEKKD AMLFEEIDRS NHKERELGFE NNVLRGEIER LKRFIPQTEQ  180
PTQPGYLEYN PVADVPSSSA GLLKQDRLSP DTVCYYGSDN TDSETALQLR LPCGDSARTK  240
EAAMPKREVS SSSCGNEEME Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-54MIKC_MADS family protein