PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc016680.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 500aa MW: 53635.2 Da PI: 9.2682

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc016680.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.4	1.4e-07	205	250	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwq 45 r++W++ Ed l av++ G g+W+ I + Rt+ q+ rw+ Cse_sc016680.1_g010.1 205 RKPWSAAEDMELFAAVQKCGEGNWANILKGDFkGDRTASQLSQRWN 250 789************************9842235999999999997 PP

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence
MNDPSNKQNH GTISEEDVSV ILQRYTATTV LGLLQEVAQV QDAKLDWNLL AKRTSTGITN 60 AREYQMLWRH LAYRDELVDK VEDEVKPLDD DSDLEFELEA FPPVSTDAST EASACVKVLI 120 ASGSTSDSGL EKGLTIEAPL TINIPNGKST GNSSENPQFS SNLRGTNITV PVSVQKQPLP 180 VVATSTEVLD TNGSGSGNLP PRRKRKPWSA AEDMELFAAV QKCGEGNWAN ILKGDFKGDR 240 TASQLSQRWN IIKKRKSNSN VKGSQLSEVH LAARRALNMA LDQPGVDSLK ASSSIGRTKS 300 NIATITNTSM RPIISDTPSA TTLPHKQASE DTSAPTVATK TFSKIRPKTS PKSLINGPDP 360 VKAAAVAAGA RIVTQSAAAA AMLNQQHLKS AMHIKKGVTN FRELHQPNVS RPLDHNSNIG 420 VGPVTPSNAP STATQETKGT SISSSLNLPK IVQQDEAAAI SAKVKTVQDT SEKQVKDVAL 480 LNVQSEIKKS VENESAKQDQ

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence

MNDPSNKQNH GTISEEDVSV ILQRYTATTV LGLLQEVAQV QDAKLDWNLL AKRTSTGITN  60
AREYQMLWRH LAYRDELVDK VEDEVKPLDD DSDLEFELEA FPPVSTDAST EASACVKVLI  120
ASGSTSDSGL EKGLTIEAPL TINIPNGKST GNSSENPQFS SNLRGTNITV PVSVQKQPLP  180
VVATSTEVLD TNGSGSGNLP PRRKRKPWSA AEDMELFAAV QKCGEGNWAN ILKGDFKGDR  240
TASQLSQRWN IIKKRKSNSN VKGSQLSEVH LAARRALNMA LDQPGVDSLK ASSSIGRTKS  300
NIATITNTSM RPIISDTPSA TTLPHKQASE DTSAPTVATK TFSKIRPKTS PKSLINGPDP  360
VKAAAVAAGA RIVTQSAAAA AMLNQQHLKS AMHIKKGVTN FRELHQPNVS RPLDHNSNIG  420
VGPVTPSNAP STATQETKGT SISSSLNLPK IVQQDEAAAI SAKVKTVQDT SEKQVKDVAL  480
LNVQSEIKKS VENESAKQDQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	207	PRRKRKP
2	247	256	QRWNIIKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	5e-79	MYB_related family protein