PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc017115.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 413aa MW: 45957.6 Da PI: 7.4122

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc017115.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2.1e-11	44	69	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G++C+F+H+p Cse_sc017115.1_g020.1 44 GEPDCSYYIRTGLCRFGATCRFNHPP 69 6899********************97 PP
2	zf-CCCH	38.4	2e-12	88	114	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCk+G++CkF+H++ Cse_sc017115.1_g020.1 88 PGQPECEYYLKTGTCKFGPTCKFHHPR 114 5789*********************96 PP
3	zf-CCCH	34.9	2.6e-11	136	160	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f rtG+Ck+G++CkF+H++ Cse_sc017115.1_g020.1 136 EPECAYFIRTGQCKFGNTCKFHHPQ 160 799********************97 PP
4	zf-CCCH	37.9	3.1e-12	288	314	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ Cse_sc017115.1_g020.1 288 PGQPDCQFYMKTGDCKFGAVCRFHHPR 314 5789*********************96 PP
5	zf-CCCH	40.2	5.4e-13	334	360	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ Cse_sc017115.1_g020.1 334 PGEPLCIFYSRYGICKFGPSCKFDHPM 360 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MLYHSEISMS RPQVSQPLDE DTLWQLNLRS REPMESGPYP VREGEPDCSY YIRTGLCRFG 60 ATCRFNHPPN RKLAIATAKM RGEYPERPGQ PECEYYLKTG TCKFGPTCKF HHPRDMAGIA 120 GRVSLNVLGY PLRPNEPECA YFIRTGQCKF GNTCKFHHPQ PSNMMVAFSG SSVYPTVQSP 180 TSPGQQSYPG VTTNWSLPSA SYVPSPHWQA PSNYAQMILP QGVVSVPGWS AYRGSLGSLS 240 SLENQQQAAG NNQIYGTSRQ YETDNGTLTG TYSSYYALPA ENVFPERPGQ PDCQFYMKTG 300 DCKFGAVCRF HHPRERAIPM PDCDLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFDHPM 360 GVFTYNYASS SADDHLLASS SGTRPLHVTS EVPLTTSEIR QRPSSDNNTD PEE

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MLYHSEISMS RPQVSQPLDE DTLWQLNLRS REPMESGPYP VREGEPDCSY YIRTGLCRFG  60
ATCRFNHPPN RKLAIATAKM RGEYPERPGQ PECEYYLKTG TCKFGPTCKF HHPRDMAGIA  120
GRVSLNVLGY PLRPNEPECA YFIRTGQCKF GNTCKFHHPQ PSNMMVAFSG SSVYPTVQSP  180
TSPGQQSYPG VTTNWSLPSA SYVPSPHWQA PSNYAQMILP QGVVSVPGWS AYRGSLGSLS  240
SLENQQQAAG NNQIYGTSRQ YETDNGTLTG TYSSYYALPA ENVFPERPGQ PDCQFYMKTG  300
DCKFGAVCRF HHPRERAIPM PDCDLSPIGL PLRPGEPLCI FYSRYGICKF GPSCKFDHPM  360
GVFTYNYASS SADDHLLASS SGTRPLHVTS EVPLTTSEIR QRPSSDNNTD PEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-169	C3H family protein