PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc017521.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 430aa MW: 48552.7 Da PI: 9.34

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc017521.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.1	8.2e-10	41	61	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+f+r G C yG+ CkF Hg Cse_sc017521.1_g030.1 41 ICRNFQR-GSCTYGALCKFVHG 61 8****.***********8 PP
2	zf-CCCH	26	1.6e-08	78	98	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+f+r G C yG CkF Hg Cse_sc017521.1_g030.1 78 ICRNFQR-GSCTYGTPCKFVHG 98 8****.***********8 PP
3	zf-CCCH	26.1	1.5e-08	115	135	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+f+ G C yG+rCkF Hg Cse_sc017521.1_g030.1 115 NCRTFQH-GSCTYGARCKFVHG 135 7****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MRNQTNALSS FHTTSSSPTV FVATNTGNDR ANTMSATGID ICRNFQRGSC TYGALCKFVH 60 GNNDLQPRPI SNASGIDICR NFQRGSCTYG TPCKFVHGNN DLRPRPISTA SGIDNCRTFQ 120 HGSCTYGARC KFVHGNFRPR PISTGSTGKN NSGKGKQEND ETPPLPKTRP YRNATSKPKE 180 LATRNWLDIP SDVMMNILQR FNAIEILLNV QRVCTNWRKI CKDPCTWRVI YLDYDIRIKH 240 GPCTWQYFKP FSYGAKQEIC KNVVDRSQGQ LADITIIGFC NDQLLEYVAD RSSQLRRLKI 300 GSSKNYIYHL TKTLKKFPLL EELSLENIDI SEEAIRTLGR DCPMLKTLKL SNEWGLKDDA 360 LGLAIAENLP GLRHLELSCC NLSDTGVLAI LDRCCHLQVL DLRIYPIYLG KIGKRCLQQI 420 KGVTFSRRFF

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MRNQTNALSS FHTTSSSPTV FVATNTGNDR ANTMSATGID ICRNFQRGSC TYGALCKFVH  60
GNNDLQPRPI SNASGIDICR NFQRGSCTYG TPCKFVHGNN DLRPRPISTA SGIDNCRTFQ  120
HGSCTYGARC KFVHGNFRPR PISTGSTGKN NSGKGKQEND ETPPLPKTRP YRNATSKPKE  180
LATRNWLDIP SDVMMNILQR FNAIEILLNV QRVCTNWRKI CKDPCTWRVI YLDYDIRIKH  240
GPCTWQYFKP FSYGAKQEIC KNVVDRSQGQ LADITIIGFC NDQLLEYVAD RSSQLRRLKI  300
GSSKNYIYHL TKTLKKFPLL EELSLENIDI SEEAIRTLGR DCPMLKTLKL SNEWGLKDDA  360
LGLAIAENLP GLRHLELSCC NLSDTGVLAI LDRCCHLQVL DLRIYPIYLG KIGKRCLQQI  420
KGVTFSRRFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	1e-06	C3H family protein