PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc017628.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26664.1 Da    PI: 5.6443
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc017628.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.61.4e-2067119456
                            -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            + ++++eqle+Le+ F+++ +++ +++ +LA++lgL+ rqV vWFqNrRa++k
  Cse_sc017628.1_g010.1  67 KKRLSSEQLEALENSFQEEIKLDPDRKMKLAHELGLQPRQVAVWFQNRRARWK 119
                            55699***********************************************9 PP
2HD-ZIP_I/II120.49.4e-3966156292
            HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                            kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLglqprqvavWFqnrRAR+k+kqlE+ y++Lk+++da+ +e+++L++ev +Lr+
  Cse_sc017628.1_g010.1  66 KKKRLSSEQLEALENSFQEEIKLDPDRKMKLAHELGLQPRQVAVWFQNRRARWKAKQLERLYDTLKQEFDAVFREKQKLQDEVLALRT 153
                            9*************************************************************************************98 PP

            HD-ZIP_I/II  90 elk 92 
                             lk
  Cse_sc017628.1_g010.1 154 ILK 156
                            776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MEWSSSNPIP FIPRPAQNSF AFLYNCNTDP YLYPSGGAEM KHQMMQHASL PMMEINQLDY  60
ENNLDKKKRL SSEQLEALEN SFQEEIKLDP DRKMKLAHEL GLQPRQVAVW FQNRRARWKA  120
KQLERLYDTL KQEFDAVFRE KQKLQDEVLA LRTILKEHGS KRQAVSTPVY TDMSGEETVE  180
STPMAAIHSS NNPLATATTD MDADCNYMLN YDGATMHTSS YSNWTVLPSY P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16695KKKRLSSEQLEALENSFQEEIKLDPDRKMK
2114122RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.14e-53HD-ZIP family protein