PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc017636.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 288aa    MW: 32462.8 Da    PI: 10.4445
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc017636.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.63.9e-141043235
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaev 35
                           +i n+s r+ tf kR++g++KK +ELS+LC++++
  Cse_sc017636.1_g040.1 10 FITNDSARKATFKKRKKGLMKKVNELSTLCGIDA 43
                           89*****************************986 PP
2SRF-TF481.5e-154478842
                           HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Cse_sc017636.1_g040.1 44 SRKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 78
                           5899******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVNELSTLCG IDASRKATFK KRKKGLMKKV  60
NELSTLCGID ACAIIYSPYE AQPEVWPSNI GVQRVLAQFK RMPEMEQSKK MVNQESFIRQ  120
RITKANEQLK KQIKENREKE MIEVMYQCLT GKGSITNLIL PDLNDLGGLV DQTLKDINRR  180
IESLKKTVPG KDVAAPPPPS LPSRPQATVG ANNLSFNNDM MARGLVMHGL EKRHVVHSSS  240
AMDGMQRTQW FTDLMTNPSD HNLGLGPGYE MTPFVDNGNQ ICPHPYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAFITNDSARKATFKKRK
22226KKRKK
32250KKRKKGLMKKVNELSTLCGIDASRKATFK
42253KKRKKGLMKKVNELSTLCGIDASRKATFKKRK
52351KKRKKGLMKKVNELSTLCGIDASRKATFK
62354KKRKKGLMKKVNELSTLCGIDASRKATFKKRK
75054KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-62M-type_MADS family protein