PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc017768.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24606.3 Da    PI: 7.5763
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc017768.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.5e-301058250
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                           rien + rqvtfskRrng+lKKA+ELSvLCdaeva++ifs++gklye++
  Cse_sc017768.1_g020.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRGKLYEFA 58
                           8***********************************************8 PP
2K-box70.45.5e-2479169797
                  K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                               + ++ ++l++e a + k++e L+  +R+llGe+L++ ++ eL q+e+qLe+s++ iR++K++++ eqie+l  kek+l  en  L
  Cse_sc017768.1_g020.1  79 DTSSVEDVQNLKHETAAMAKKVEALEVAKRKLLGEGLGTSTIDELVQIEHQLERSVRIIRARKMKVYNEQIEQLHAKEKMLAAENAIL 166
                            34567889******************************************************************************** PP

                  K-box  95 rkk 97 
                            ++k
  Cse_sc017768.1_g020.1 167 TEK 169
                            998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALVIFSP RGKLYEFANS  60
SMQETIERYR SHVKDIQTDT SSVEDVQNLK HETAAMAKKV EALEVAKRKL LGEGLGTSTI  120
DELVQIEHQL ERSVRIIRAR KMKVYNEQIE QLHAKEKMLA AENAILTEKC IIQTDKATEE  180
MGVDLNVLES GENSDVETEL FIGPPETRMK QLSWPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-84MIKC_MADS family protein