PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018411.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 417aa MW: 46731.4 Da PI: 7.6039

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018411.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	51.5	1.9e-16	323	367	8	52
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++y+++ i++AA + +++ T+ K+ R++GI+RWP+Rk++s+ Cse_sc018411.1_g020.1 323 EIIAQYYYMLIAKAAEKFNIGITIFKKSYRELGIQRWPYRKLRSI 367 7799**************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence
GNVIHCTAKG NSGSQFLAVK RGECVLGVEF RIRMDDTFML EFDGATTIRK VVVKPKGFAS 60 SSATLILDDA EIPAIKSLKS ETGWQLSSVR PGLKTYGLGR GGIFRHVDPK HEKKGHLERM 120 GAFGVMYRLE LDVADDTEHT LVVLFDEPVT KLVKFPAESI LQEDDETLEE HANLPPGIAN 180 LIGTTHVFEI KTHTYYEYAS FESFTCWTVD PPQPSVETAS STTIDDGSVI AGSPSRPQSK 240 SPSVVTPTKP REDMKKKIEV SDAEIEMIPD NDVNPTDDKK KKRLDIEESD AKIDMTPTDV 300 DQGKTSIPIV KKKAAVRKKP RREIIAQYYY MLIAKAAEKF NIGITIFKKS YRELGIQRWP 360 YRKLRSIQLL INTIQAENGG AKVDGNTQQI ITKLQEENKC VEETPELEFR KSTKRLR

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence

GNVIHCTAKG NSGSQFLAVK RGECVLGVEF RIRMDDTFML EFDGATTIRK VVVKPKGFAS  60
SSATLILDDA EIPAIKSLKS ETGWQLSSVR PGLKTYGLGR GGIFRHVDPK HEKKGHLERM  120
GAFGVMYRLE LDVADDTEHT LVVLFDEPVT KLVKFPAESI LQEDDETLEE HANLPPGIAN  180
LIGTTHVFEI KTHTYYEYAS FESFTCWTVD PPQPSVETAS STTIDDGSVI AGSPSRPQSK  240
SPSVVTPTKP REDMKKKIEV SDAEIEMIPD NDVNPTDDKK KKRLDIEESD AKIDMTPTDV  300
DQGKTSIPIV KKKAAVRKKP RREIIAQYYY MLIAKAAEKF NIGITIFKKS YRELGIQRWP  360
YRKLRSIQLL INTIQAENGG AKVDGNTQQI ITKLQEENKC VEETPELEFR KSTKRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	4e-21	Nin-like family protein