PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc018485.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 631aa MW: 70030.8 Da PI: 6.1412

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc018485.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	1.9e-09	510	558	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l Cse_sc018485.1_g020.1 510 PWTLSEVIKLVEGVSRHGAGRWSEIKRISFptcSHRTSVDLKDKWRNLL 558 8***********************977679*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
METVVGVEES GRSEVESASA IVITRSDNTK QIADPVVYKL ARVEGDGRLV PATDDEVMEA 60 EFLDGNSSVH HVLNNGETGV CTLDDDAFDE EFMPIDCEGL LNFEDPSTQG GRSDALVDTT 120 VDLAKLNPQF EEIPRLESTP VDGEIDQSVD IKQADPPIGS TESEASTSTM CASLQPDFSK 180 LKGEICLDNL SVRELQATFK ATFGRETSVK DKQWLKRRIS MGLSNSCDVS ATTFRIENNR 240 VAKKVKREDY NDEDEIHNED PFDGFGGRNA RGHKARNINK SAGQTIQLED HFSGSSKSVK 300 SDTSSPHIHS DDNLGAKRVR KPTKRYIEEA SEPDSGESGG KLVSSVRSSG HGPRTRVRPI 360 HNIQPVSRPL VTRQDSLGGS GVEIPYVSRI RRGRPRENYV ALMDFQSCGM GMASKHVKKS 420 HDDHEFQSDN EMENRKVKVE PPTGWIQQPV SIYTAHSCLE GENERYSEQS EDLNNESDEG 480 PMNSYADDSD DDILTVPTAK GGMRRKHHRP WTLSEVIKLV EGVSRHGAGR WSEIKRISFP 540 TCSHRTSVDL KDKWRNLLRA SFTQLPADKG VHNSKKQASI PIPAPILLRV RELAKLQGHI 600 IPHVRPDLRP VKFGGHNSSN RHVNDIRSGF L

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

METVVGVEES GRSEVESASA IVITRSDNTK QIADPVVYKL ARVEGDGRLV PATDDEVMEA  60
EFLDGNSSVH HVLNNGETGV CTLDDDAFDE EFMPIDCEGL LNFEDPSTQG GRSDALVDTT  120
VDLAKLNPQF EEIPRLESTP VDGEIDQSVD IKQADPPIGS TESEASTSTM CASLQPDFSK  180
LKGEICLDNL SVRELQATFK ATFGRETSVK DKQWLKRRIS MGLSNSCDVS ATTFRIENNR  240
VAKKVKREDY NDEDEIHNED PFDGFGGRNA RGHKARNINK SAGQTIQLED HFSGSSKSVK  300
SDTSSPHIHS DDNLGAKRVR KPTKRYIEEA SEPDSGESGG KLVSSVRSSG HGPRTRVRPI  360
HNIQPVSRPL VTRQDSLGGS GVEIPYVSRI RRGRPRENYV ALMDFQSCGM GMASKHVKKS  420
HDDHEFQSDN EMENRKVKVE PPTGWIQQPV SIYTAHSCLE GENERYSEQS EDLNNESDEG  480
PMNSYADDSD DDILTVPTAK GGMRRKHHRP WTLSEVIKLV EGVSRHGAGR WSEIKRISFP  540
TCSHRTSVDL KDKWRNLLRA SFTQLPADKG VHNSKKQASI PIPAPILLRV RELAKLQGHI  600
IPHVRPDLRP VKFGGHNSSN RHVNDIRSGF L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	7e-99	MYB_related family protein