PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019429.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 643aa MW: 70671.7 Da PI: 8.2123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019429.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.2	9.3e-06	352	375	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++Cr+++ G C+ G++CkF+H+ Cse_sc019429.1_g010.1 352 KISICRHYMH-GKCHEGEKCKFSHD 375 66799999.***********7 PP
2	zf-CCCH	22.7	1.8e-07	409	430	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ ++tG+C +G+rC F+H+ Cse_sc019429.1_g010.1 409 PCNKLLATGECDRGSRCLFSHD 430 7********************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MTVTMGEPGT GTLTQIPMTR RKKPLRSKTA DTLFHILSVC YNHQFSGPVT KDDVPLDCTD 60 ILPNDSLCQE DTSMDETRVV LDTQEECLFN TQAELAELDH NTVGETTDLC HNVDTDPSVS 120 VDVNDQDNLM DLMMSSPPPL PTDKNVEEGE ISGDFMDFTP EDFIGIESQL ENDNNLNTLA 180 TVAVEDAGKD TMGIVNKNTR NLVDYSELVV HGKQATAVTG SDSSLRRSGR LLSFEDNLRN 240 SKTRNQDLVN PVKRQGSSTE EERVCKKAKK LVDLTTAPQN SNSVGKHHGD ASQEVVDASV 300 NQDAANQKKK KRVVTQESRT NKKRKDRIKR AEKRKELGVI RPKLELRVKE KKISICRHYM 360 HGKCHEGEKC KFSHDTIPLT KSKPCCHFAR HACMKGDDCP YDHQLSKYPC NKLLATGECD 420 RGSRCLFSHD AVNAVNDSMP DQESPNSGSK RVDAKPCSTP KYVASNTERN PPVDITPKVF 480 TRPPKGISFL SQKRSPLESR SSPNVGSGVK EATKTSSVTQ DPKEITKTPP VVPRGINFLS 540 FGKKPDLDKS NGGFSFKISN GIGKSPLGKL EGEASKSDPA VNVVTGVKAD LPTDRPTVSQ 600 KPLHMMSFLS STSQKSLQST LAFASKFEAG VKTIKPGNLT QKI

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MTVTMGEPGT GTLTQIPMTR RKKPLRSKTA DTLFHILSVC YNHQFSGPVT KDDVPLDCTD  60
ILPNDSLCQE DTSMDETRVV LDTQEECLFN TQAELAELDH NTVGETTDLC HNVDTDPSVS  120
VDVNDQDNLM DLMMSSPPPL PTDKNVEEGE ISGDFMDFTP EDFIGIESQL ENDNNLNTLA  180
TVAVEDAGKD TMGIVNKNTR NLVDYSELVV HGKQATAVTG SDSSLRRSGR LLSFEDNLRN  240
SKTRNQDLVN PVKRQGSSTE EERVCKKAKK LVDLTTAPQN SNSVGKHHGD ASQEVVDASV  300
NQDAANQKKK KRVVTQESRT NKKRKDRIKR AEKRKELGVI RPKLELRVKE KKISICRHYM  360
HGKCHEGEKC KFSHDTIPLT KSKPCCHFAR HACMKGDDCP YDHQLSKYPC NKLLATGECD  420
RGSRCLFSHD AVNAVNDSMP DQESPNSGSK RVDAKPCSTP KYVASNTERN PPVDITPKVF  480
TRPPKGISFL SQKRSPLESR SSPNVGSGVK EATKTSSVTQ DPKEITKTPP VVPRGINFLS  540
FGKKPDLDKS NGGFSFKISN GIGKSPLGKL EGEASKSDPA VNVVTGVKAD LPTDRPTVSQ  600
KPLHMMSFLS STSQKSLQST LAFASKFEAG VKTIKPGNLT QKI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	308	325	KKKKRVVTQESRTNKKRK
2	308	329	KKKKRVVTQESRTNKKRKDRIK
3	308	335	KKKKRVVTQESRTNKKRKDRIKRAEKRK
4	309	326	KKKKRVVTQESRTNKKRK
5	309	330	KKKKRVVTQESRTNKKRKDRIK
6	309	336	KKKKRVVTQESRTNKKRKDRIKRAEKRK
7	310	327	KKKKRVVTQESRTNKKRK
8	322	349	KKKKRVVTQESRTNKKRKDRIKRAEKRK