PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019438.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 187aa MW: 20851.3 Da PI: 5.1442

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019438.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.3	4.4e-37	7	104	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+ pyf+ +q + +fa+vhk+FGasnv+kll +lp ++r++a+ s+ yeA r++dP+yG+v+ i++l+qq+ Cse_sc019438.1_g020.1 7 SCGACKFLRRKCTNECVFTPYFCYSQgADHFAAVHKVFGASNVSKLLMKLPLQNRSEAAISISYEALSRMHDPIYGCVAQIFALEQQV 94 6*********************9989******************************************************** PP DUF260 88 eqlkaelall 97 ++l++e+++l Cse_sc019438.1_g020.1 95 ASLQEEIDQL 104 ****9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MTGTRFSCGA CKFLRRKCTN ECVFTPYFCY SQGADHFAAV HKVFGASNVS KLLMKLPLQN 60 RSEAAISISY EALSRMHDPI YGCVAQIFAL EQQVASLQEE IDQLGTFMAY ASFGQSNYAT 120 LQDTNNANTG LPFSFEFNDT SINDHLNQPT STLFDALQAS SPFEEHISHS YSFLDHPMTE 180 NDCNIHA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	2e-52	LBD family protein