PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019820.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 226aa MW: 24975.7 Da PI: 6.633

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019820.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.5	1.1e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++Cv+apyf++eq +++fa++h++FGasnv+kll++lp + r +a+ +++yeA+ar++dP+yG+v++i++lqqq+ Cse_sc019820.1_g010.1 7 PCGACKFLRRKCVRGCVFAPYFCHEQgAAHFAAIHRVFGASNVSKLLAHLPVSGRCEAAITIAYEAQARLQDPIYGCVSHIFALQQQV 94 7***********************89******************************************************** PP DUF260 88 eqlkaelallkee 100 +l+++la+lke+ Cse_sc019820.1_g010.1 95 VSLQSQLASLKEQ 107 ******99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGAAHFAAI HRVFGASNVS KLLAHLPVSG 60 RCEAAITIAY EAQARLQDPI YGCVSHIFAL QQQVVSLQSQ LASLKEQAAQ IVYSGSSCSN 120 YPTNDHRHNG RLPSNTPPQD IRSWFQQSDN SCLNMPQFDQ NSSASNINEI MNVNSTGHHY 180 ENSFLKEEDA SFSSFQEGSS YSIDYLDMQI SHTEDLHSVA FGYVQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58190.1	3e-56	LBD family protein