PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019853.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 428aa MW: 48172.9 Da PI: 6.8308

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019853.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.7e-13	146	185	2	43
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 g+W++eEde l ++ +++ + W++I++ ++ gR++k+c++r Cse_sc019853.1_g010.1 146 GPWSPEEDEVLENLMEKHDRN-WSLISKSIP-GRSGKSCRLR 185 89***************66.*****.******97 PP
2	Myb_DNA-binding	39.4	1.4e-12	200	239	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eEde l ++v+++ ++ W++I++ ++ gR++k+c srw Cse_sc019853.1_g010.1 200 SFTPEEDEMLQNLVEKHFPN-WSLISKSIP-GRSAKSCWSRW 239 69*************866.*****.********* PP
3	Myb_DNA-binding	41.8	2.6e-13	245	285	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eEde ++++++++G++ W +I++ ++ gR+++ c +rw Cse_sc019853.1_g010.1 245 PFTLEEDEMFKKLIEKHGPN-WPLISKSIP-GRSANTCELRWE 285 89**************77.*****.*********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
FVFFFLFFAQ IQGPHEELLD REHKTKNYLV AFEAARGQSP SIGDMAMDNV SQPLRGTHSY 60 SRDQSAPSWN ALNKQDSSRM MIDGDNVQAF VGGEIGSQNI IYEGKSSHVV GGVVNGQAPS 120 ISDMARGNMS SGVIKHQKKD MDHIEGPWSP EEDEVLENLM EKHDRNWSLI SKSIPGRSGK 180 SCRLRSGKSC RLRWLSLYRS FTPEEDEMLQ NLVEKHFPNW SLISKSIPGR SAKSCWSRWS 240 FVHRPFTLEE DEMFKKLIEK HGPNWPLISK SIPGRSANTC ELRWETIWHS LQSHENIENH 300 WNLTLKRKGS SMTNEDLTIS DHNIFIQPPS VRDINGGQRN SYIHDLTLRL ALGGVSDQAP 360 SIGDMAMETE SQNSIQQGNL SHEVGGMVNG QVPSISDMVR GNMSSGCTHS FSRDKSAPSW 420 NALNETHH

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

FVFFFLFFAQ IQGPHEELLD REHKTKNYLV AFEAARGQSP SIGDMAMDNV SQPLRGTHSY  60
SRDQSAPSWN ALNKQDSSRM MIDGDNVQAF VGGEIGSQNI IYEGKSSHVV GGVVNGQAPS  120
ISDMARGNMS SGVIKHQKKD MDHIEGPWSP EEDEVLENLM EKHDRNWSLI SKSIPGRSGK  180
SCRLRSGKSC RLRWLSLYRS FTPEEDEMLQ NLVEKHFPNW SLISKSIPGR SAKSCWSRWS  240
FVHRPFTLEE DEMFKKLIEK HGPNWPLISK SIPGRSANTC ELRWETIWHS LQSHENIENH  300
WNLTLKRKGS SMTNEDLTIS DHNIFIQPPS VRDINGGQRN SYIHDLTLRL ALGGVSDQAP  360
SIGDMAMETE SQNSIQQGNL SHEVGGMVNG QVPSISDMVR GNMSSGCTHS FSRDKSAPSW  420
NALNETHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	6e-22	MYB family protein