PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc019853.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 374aa MW: 42992.5 Da PI: 7.8484

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc019853.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.6	5.9e-13	7	49	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++eEde l++++++ G+++W+ I + ++ R++k+c sr ++ Cse_sc019853.1_g030.1 7 AWSPEEDEMLLNLIEKNGPRNWSPICKSIP-DRSGKSCWSRCFS 49 8***************************.*****999765 PP
2	Myb_DNA-binding	41.2	3.8e-13	53	95	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ede l+++++++G++ W++I++ + gR++ +c srw+++ Cse_sc019853.1_g030.1 53 SFTPKEDEMLLNLFEKHGPN-WSLISNSIR-GRSGQSCTSRWLSL 95 69**************77.*****.*********976 PP
3	Myb_DNA-binding	33.3	1.1e-10	107	147	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W++eEde l + v+++G + W++I++ ++ g ++k+ +rw++ Cse_sc019853.1_g030.1 107 WSPEEDEMLENRVQEHGRN-WSLISKSIP-GSSGKSSMLRWLS 147 ***************66.*****.*********87 PP
4	Myb_DNA-binding	42.3	1.7e-13	151	191	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+ Ede l ++v+++G++ W++I++ ++ gR++ +c srw+ Cse_sc019853.1_g030.1 151 PFTPGEDEMLQNLVEKHGPN-WSLISKSLP-GRSGQSCLSRWL 191 79**************77.*****.*********6 PP
5	Myb_DNA-binding	43.4	7.7e-14	196	238	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEde +++a++++G + W++I r + gRt++ +k++w++ Cse_sc019853.1_g030.1 196 PFTHEEDETILRAHARFGDK-WSAIGRLLT-GRTDNVIKNHWNSI 238 89**************99.****9.*********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MDQIEEAWSP EEDEMLLNLI EKNGPRNWSP ICKSIPDRSG KSCWSRCFSL QRSFTPKEDE 60 MLLNLFEKHG PNWSLISNSI RGRSGQSCTS RWLSLVEKEM DQIKRLWSPE EDEMLENRVQ 120 EHGRNWSLIS KSIPGSSGKS SMLRWLSLYR PFTPGEDEML QNLVEKHGPN WSLISKSLPG 180 RSGQSCLSRW LFVHRPFTHE EDETILRAHA RFGDKWSAIG RLLTGRTDNV IKNHWNSILK 240 WKSRSMTNED ITIRVCMCIP LFRYSSAPGR GQGSSYIHDG NLSHEVGGVS RQPPSRDEMG 300 RDNMSSGSTH SYSGDESAPS WNALNIRDSS PTMTESDRLL NFSREMIIES YIRVGDNLFL 360 LYVNRTHLRT IVIK

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MDQIEEAWSP EEDEMLLNLI EKNGPRNWSP ICKSIPDRSG KSCWSRCFSL QRSFTPKEDE  60
MLLNLFEKHG PNWSLISNSI RGRSGQSCTS RWLSLVEKEM DQIKRLWSPE EDEMLENRVQ  120
EHGRNWSLIS KSIPGSSGKS SMLRWLSLYR PFTPGEDEML QNLVEKHGPN WSLISKSLPG  180
RSGQSCLSRW LFVHRPFTHE EDETILRAHA RFGDKWSAIG RLLTGRTDNV IKNHWNSILK  240
WKSRSMTNED ITIRVCMCIP LFRYSSAPGR GQGSSYIHDG NLSHEVGGVS RQPPSRDEMG  300
RDNMSSGSTH SYSGDESAPS WNALNIRDSS PTMTESDRLL NFSREMIIES YIRVGDNLFL  360
LYVNRTHLRT IVIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-38	MYB family protein