PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc020118.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 233aa    MW: 25532.9 Da    PI: 4.7232
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc020118.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC179.53e-56301341102
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+tr
  Cse_sc020118.1_g050.1  30 QLQMFWNYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 117
                            89*****998899*************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdelk 102
                            tdifdflvdivprde+k
  Cse_sc020118.1_g050.1 118 TDIFDFLVDIVPRDEIK 134
                            **************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MDNNTTPTTA TPTTPPPPPY QHLLQQQHQQ LQMFWNYQRQ EIEQVNDFKN HQLPLARIKK  60
IMKADEDVRM ISAEAPILFA KACELFILEL TIRSWLHAEE NKRRTLQKND IAAAITRTDI  120
FDFLVDIVPR DEIKDDVGVG VGVGGMVGSN TASGMPYYYP PMGQPAAGMG GVTMGRPAVD  180
PTGMYGPPSQ AWQSVWQTGD DGSFGSGGSG GHGGIDGQGF PIFLQDLEIT GLM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103109RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-82NF-YC family protein