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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cse_sc020231.1_g010.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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| Family | MYB | ||||||||
| Protein Properties | Length: 221aa MW: 24766.9 Da PI: 8.2217 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 46.9 | 6.5e-15 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+g+W +eEd +l+++v+ G ++W+ I + + gR++k+c++rw +
Cse_sc020231.1_g010.1 16 KGSWNPEEDAKLIQLVETQGARNWSVIGSSIL-GRSGKSCRLRWCNQ 61
799****************************9.***********985 PP
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| 2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 70 | 112 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
++T+ Ed+ +++a+ +G++ W+ I++ ++ gRt++ +k++w++
Cse_sc020231.1_g010.1 70 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 112
89******************.*********.***********986 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 221 aa Download sequence |
MTSSSSNDDV NLLKKKGSWN PEEDAKLIQL VETQGARNWS VIGSSILGRS GKSCRLRWCN 60 QLSPTVQHRP FTPHEDDVIL RAHLIHGNKW SVISKLLPGR TDNAIKNHWN STLRRRGLTL 120 TRSSSESEST QSDDNDEGLK NKRRRCVSDV SSCDGMTVLR LLPPGDDGEK KKDGYEVEKG 180 TVEIEDTCLV DVMKKMIAKE VRSYIDELRA KDGLSFGPTT E |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 142 | 172 | KRRRCVSDVSSCDGMTVLRLLPPGDDGEKKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37260.1 | 1e-43 | MYB family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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