PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc020247.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 537aa MW: 59996.3 Da PI: 7.2502

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc020247.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	38.2	3.5e-12	240	296	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g Cse_sc020247.1_g010.1 240 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 296 78*****************77776664346655.77****************98 PP
2	AP2	44.9	2.9e-14	339	390	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t e+Aa+a++ a+ k++g Cse_sc020247.1_g010.1 339 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEDAAEAYDVAAIKFRG 390 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MKSMTTNNHD NNENNKNSDN NWLGFSLSHH SSDSAHTFNY QNIYYGGVDG VNNNGIYSSY 60 PIMPLKSDGS LCLMDNITKS QGMMVGSTTP KLENFFGGVT MGTPELDTNA MYYHQNYQIQ 120 PQHHYQDYSG LYSSVQQHEA KIAEHATSAL YLPSIGEGWI SNNYHTGDTN GLQSLNLSMS 180 PGCSQSSSCV TISQQQVTHA AANVTANVVM ETKKRGSEKV DQQKKIVHRK SLDTFGQRTS 240 QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQGGYDME EKAARAYDLA ALKYWGASTH 300 INFPVESYQQ ELEEMKNMSR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV 360 AGNKDLYLGT FSTQEDAAEA YDVAAIKFRG MNAVTNFDMS KYNVEAIIAS DTLLSGELAK 420 RTKVQEPTEH LQICDTKTIS SGPNGGMLEW KMELYDQNIT SGSVEDNESS TIKNHLSNSS 480 SSQEDSPKRN NDLLMVLGIP PVPGSNSTNT WIPTATETAT TTQLRTHMPM FAAWSDA

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MKSMTTNNHD NNENNKNSDN NWLGFSLSHH SSDSAHTFNY QNIYYGGVDG VNNNGIYSSY  60
PIMPLKSDGS LCLMDNITKS QGMMVGSTTP KLENFFGGVT MGTPELDTNA MYYHQNYQIQ  120
PQHHYQDYSG LYSSVQQHEA KIAEHATSAL YLPSIGEGWI SNNYHTGDTN GLQSLNLSMS  180
PGCSQSSSCV TISQQQVTHA AANVTANVVM ETKKRGSEKV DQQKKIVHRK SLDTFGQRTS  240
QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQGGYDME EKAARAYDLA ALKYWGASTH  300
INFPVESYQQ ELEEMKNMSR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV  360
AGNKDLYLGT FSTQEDAAEA YDVAAIKFRG MNAVTNFDMS KYNVEAIIAS DTLLSGELAK  420
RTKVQEPTEH LQICDTKTIS SGPNGGMLEW KMELYDQNIT SGSVEDNESS TIKNHLSNSS  480
SSQEDSPKRN NDLLMVLGIP PVPGSNSTNT WIPTATETAT TTQLRTHMPM FAAWSDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-124	AP2 family protein