PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc021041.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 185aa    MW: 21361.1 Da    PI: 9.6065
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc021041.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.19.5e-0815471244
                           HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
                 SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstg 44
                            f  R +g+ K  +ELS+LC++ ++ i++s+++
  Cse_sc021041.1_g010.1 15 CFKIRMEGMKKRLSELSTLCGIHASAIVYSPNN 47
                           577799999999******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    
MKLTFMTNDS GIKYCFKIRM EGMKKRLSEL STLCGIHASA IVYSPNNPQP EVWPNSMGVY  60
NVLAQFLRTR VINWFRNMVT QEGYIQERIK KADKELKKQV KKNHKQETKK IIYHCLIGNT  120
PLDSLCMKNL NDLGLLVDQT LTEIDSRIEF LKKASTAQCY TLCSSKFMCF LSCGNLNKEV  180
FGLRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-37M-type_MADS family protein