PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc021152.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 482aa MW: 53552.9 Da PI: 9.3884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc021152.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33.7	1.2e-10	189	309	1	82
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......................................te 49 +fY++Y+k+ GF+++ ++++ + ++ + f+C++ gk++++ + ++ Cse_sc021152.1_g020.1 189 NFYRHYSKMGGFDIKLGTESNPDGSDCPSIKYFRCNRGGKKRDSMYDrhrsdsdvdvrgrvngkgangaidnkgkgidlslvgdsfAK 276 6******************999999999********9998899********************************999 PP FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkle 82 k+ r++++ +tgC a+l+v+k + +ev++++ Cse_sc021152.1_g020.1 277 KKFRKNTSCKTGCLAQLRVRKVDGVMYEVYRMV 309 999****************99**9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MYRGRVTHFD FRVKRVVSHL ICEFKKGVSR KVGDGSILVI VLGSRGLESL CVSVLFEVDK 60 NLKVQIFCHF SNDVLSLMTL VDIRYSIGLG TISSSNNVGE SSSCSYVCGG SSSLGSDGVR 120 VSSSGSVSDD SSSRLVSASS SSSVVNVSNV GDRSVGVSSV IDGVWVPDVD VSLKPTKGTV 180 FVSLVQTYNF YRHYSKMGGF DIKLGTESNP DGSDCPSIKY FRCNRGGKKR DSMYDRHRSD 240 SDVDVRGRVN GKGANGAIDN KGKGIDLSLV GDSFAKKKFR KNTSCKTGCL AQLRVRKVDG 300 VMYEVYRMVF VPFTGIDNHN RSVTFGAGLL ADETIASYKW LLRAFKKAFL TYPQVVVTDQ 360 DPSMKQAIAD VFPNARHRLC MWHIMQKLSV KISPSIFEEE WKSIIDEFGL SKNKWLSDIY 420 DMRSRWIPAF LRDEDLSGLM RTTSRSESEN HFFGRWTNAN LTLVEFISHF DSAMDSQRLA 480 FN

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MYRGRVTHFD FRVKRVVSHL ICEFKKGVSR KVGDGSILVI VLGSRGLESL CVSVLFEVDK  60
NLKVQIFCHF SNDVLSLMTL VDIRYSIGLG TISSSNNVGE SSSCSYVCGG SSSLGSDGVR  120
VSSSGSVSDD SSSRLVSASS SSSVVNVSNV GDRSVGVSSV IDGVWVPDVD VSLKPTKGTV  180
FVSLVQTYNF YRHYSKMGGF DIKLGTESNP DGSDCPSIKY FRCNRGGKKR DSMYDRHRSD  240
SDVDVRGRVN GKGANGAIDN KGKGIDLSLV GDSFAKKKFR KNTSCKTGCL AQLRVRKVDG  300
VMYEVYRMVF VPFTGIDNHN RSVTFGAGLL ADETIASYKW LLRAFKKAFL TYPQVVVTDQ  360
DPSMKQAIAD VFPNARHRLC MWHIMQKLSV KISPSIFEEE WKSIIDEFGL SKNKWLSDIY  420
DMRSRWIPAF LRDEDLSGLM RTTSRSESEN HFFGRWTNAN LTLVEFISHF DSAMDSQRLA  480
FN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-34	FAR1 family protein