PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc021419.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 474aa MW: 52929.9 Da PI: 9.653

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc021419.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	47	90	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+ Ed l+d+vk++ g++Wk+Ia+ ++ gR++ qc +rwqk+l Cse_sc021419.1_g030.1 47 WTEKEDSTLADVVKKFNGRNWKKIAESIP-GRSDVQCLHRWQKVL 90 ***************************.**********986 PP
2	Myb_DNA-binding	60	5.1e-19	96	142	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G + W++Ia+++ gR +kqc++rw+++l Cse_sc021419.1_g030.1 96 KGPWTKEEDDRIKELVEKHGCKKWSLIAKHLA-GRIGKQCRERWHNHL 142 79****************************.***********97 PP
3	Myb_DNA-binding	49.4	1.1e-15	148	191	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT E+ lv +++ +G++ W+ Iar ++ gRt++ +k++w++ Cse_sc021419.1_g030.1 148 KDAWTDAEESTLVYYHQVYGNK-WAEIARFLP-GRTDNAIKNHWNS 191 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MAGVKDELLG FTSCSSISDS SCDANTPRSN CSRGSVGQTK RSSQAGWTEK EDSTLADVVK 60 KFNGRNWKKI AESIPGRSDV QCLHRWQKVL NPELVKGPWT KEEDDRIKEL VEKHGCKKWS 120 LIAKHLAGRI GKQCRERWHN HLDPAIKKDA WTDAEESTLV YYHQVYGNKW AEIARFLPGR 180 TDNAIKNHWN SSKRRLDLNM PPTFPTRAAS PELNLAKKRG RDISLVEQNT VEKELFKQST 240 ALEGDLNTCS TNLSLGNPKS GTTNDDRLGF TRYAKVHKIE PSTSLDETPK RLRVASVSDL 300 KLAASPDNSF LSLSTLTTEK HIVSGTPPYR SLCYQPPQVK NLTLLLENCG SPTTPPDLAL 360 SISVNNSSPE SILRNSALSY KNTPSIIRKR TPKKSVEPCT PGEAQTSHHW SENIKTLESE 420 NAKRGSEAWL HRPQPFLGRR LDYMFDAEKD PTLVRCCTPG SVTPSSKAKV MLTP

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MAGVKDELLG FTSCSSISDS SCDANTPRSN CSRGSVGQTK RSSQAGWTEK EDSTLADVVK  60
KFNGRNWKKI AESIPGRSDV QCLHRWQKVL NPELVKGPWT KEEDDRIKEL VEKHGCKKWS  120
LIAKHLAGRI GKQCRERWHN HLDPAIKKDA WTDAEESTLV YYHQVYGNKW AEIARFLPGR  180
TDNAIKNHWN SSKRRLDLNM PPTFPTRAAS PELNLAKKRG RDISLVEQNT VEKELFKQST  240
ALEGDLNTCS TNLSLGNPKS GTTNDDRLGF TRYAKVHKIE PSTSLDETPK RLRVASVSDL  300
KLAASPDNSF LSLSTLTTEK HIVSGTPPYR SLCYQPPQVK NLTLLLENCG SPTTPPDLAL  360
SISVNNSSPE SILRNSALSY KNTPSIIRKR TPKKSVEPCT PGEAQTSHHW SENIKTLESE  420
NAKRGSEAWL HRPQPFLGRR LDYMFDAEKD PTLVRCCTPG SVTPSSKAKV MLTP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-81	MYB family protein