PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc021838.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 131aa    MW: 14836.2 Da    PI: 8.3894
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc021838.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.75.8e-3661051100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk++r+kC+ +C++ pyfp ++ ++fa+vh+++Ga nv k+l++lp + r da+++l+ eA++r+rdP yG+vg++++lq++++
  Cse_sc021838.1_g050.1   6 RCAACKYQRKKCPLNCIFFPYFPPNDLQRFAFVHRIYGACNVAKTLQQLPVQLRGDAAECLYQEAKCRMRDPLYGCVGIVSQLQNEIN 93 
                            6*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ++++ela++++e
  Cse_sc021838.1_g050.1  94 NAQSELAMVQAE 105
                            ********9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    
MNIKNRCAAC KYQRKKCPLN CIFFPYFPPN DLQRFAFVHR IYGACNVAKT LQQLPVQLRG  60
DAAECLYQEA KCRMRDPLYG CVGIVSQLQN EINNAQSELA MVQAELSILR ASYESVTTMV  120
ESPSPMFGPF S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26620.12e-45LBD family protein