PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc022019.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB_related
Protein Properties Length: 304aa    MW: 34329.4 Da    PI: 10.3067
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc022019.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-16154196347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            ++T+ Ed+++++a+  +G++ W+ I++ ++ gRt++ +k++w++ 
  Cse_sc022019.1_g020.1 154 PFTPHEDDIILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 196
                            89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MIRENANRCK DEKLIKGGGV GVTSAVVMGW GKEGRWKRGR WRLWAKEVRR SYIDDLRAKD  60
GLPFWACFAP FSPTDLRAKD GLPFGPALHP VAQQKERVMD PRRRRQAYTV SGNTGCKDTW  120
KIRSVIGSSI LGRSGKSCRL RWCNQLSPNV QHRPFTPHED DIILRAHLIH GNKWSVISKL  180
LPGRTDNAIK NHWNSTLRRR GLTLTRSSES ESTQSDDNDE GLGLIKNKRR CVSVSDVSSC  240
DGMTLLTLLP PRDGEVEKGT VEIDDTCLVD VMKRMIAKEV RSYVDELRAK DCLSFGPVLH  300
PVTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.15e-31MYB family protein