PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc023018.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 726aa    MW: 80496.6 Da    PI: 6.9156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc023018.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.2e-201671156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +++ +++t+ q+++Le+ F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  Cse_sc023018.1_g010.1 16 KKRYHRHTALQIQILESTFKECPHPDEKTRMQLSRELGLAPRQIKFWFQNRRTQMK 71
                           688899***********************************************998 PP
2START160.31.5e-502264512206
                            HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            +a  a++el+++ + +ep+W+k      e++n d + + f++ +        ++ea++asgvv m++ +lv  ++d+  +W e ++  
  Cse_sc023018.1_g010.1 226 IARNAMDELIRLLQTDEPLWTKGHkdgmEILNIDNYKRLFPRHNDtpknpnVRTEASKASGVVMMNSLQLVDVFVDSI-KWIELFPti 312
                            56789*******************8888888888888888775559999999**************************.999999999 PP

                            ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEE CS
                  START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliep 156
                              +a t+evissg      g lqlm+ elq+lsplv  R  + +R+ +q ++g+wv+v vS d +q++p ++s  ++++lpSg+li++
  Cse_sc023018.1_g010.1 313 vsRARTIEVISSGllgspsGSLQLMYEELQVLSPLVLtRQLYLLRFVQQIEQGSWVVVNVSYDLPQYNPYTQSRFKVHRLPSGCLIQD 400
                            99************************************************************************************** PP

                            ECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 157 ksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                            ++ng+skvtwveh+++++  p + l+r +++sgla+gak+w+a lqr ce+
  Cse_sc023018.1_g010.1 401 MPNGYSKVTWVEHMEVEEVAPiDRLYRDFIHSGLAFGAKRWLASLQRACER 451
                            *************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    
MEFGGGSGGA DSSDKKKRYH RHTALQIQIL ESTFKECPHP DEKTRMQLSR ELGLAPRQIK  60
FWFQNRRTQM KAQHERADNC ALRAENDKIR CENIVIREAL KNLMCPTCGG PPIGDDCYFD  120
EQKLRFENAQ LKEELDRVSS IAAKYIGRPM LQLPPVQPVH MSSLDLSMAS YGGGTSNRMM  180
MMMNSGPSLD LDLLTGPTIG ASSSMINPDP PFVHLSDMDK SVMTDIARNA MDELIRLLQT  240
DEPLWTKGHK DGMEILNIDN YKRLFPRHND TPKNPNVRTE ASKASGVVMM NSLQLVDVFV  300
DSIKWIELFP TIVSRARTIE VISSGLLGSP SGSLQLMYEE LQVLSPLVLT RQLYLLRFVQ  360
QIEQGSWVVV NVSYDLPQYN PYTQSRFKVH RLPSGCLIQD MPNGYSKVTW VEHMEVEEVA  420
PIDRLYRDFI HSGLAFGAKR WLASLQRACE RTSSLMTTTM SHDIGGGIPS PEGKRSMMKL  480
SKRMVNNFCS SINPSNGHQW KSPSGMNEFE VRATLHKSTD PGQPNGMVLS ASTTIWLPVT  540
SQNVFDFFRD GRTRPQWDVL SNQNPVQEVA HISTGTHPGN CISVLRAYTP SQNNMLILQE  600
SCIDASGSLV VYCPVDLPAI NIAMNGEDPS YIPLLPSGFI ITTDGHNEIK SEGNTSGAST  660
SKTTSDPTSE HGTASTGSLV TVVFQIQVSS LPSAKMSPES LATVNNLITN TVHQVKASFN  720
GCSTST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein