PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc023298.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family YABBY
Protein Properties Length: 227aa    MW: 25260.6 Da    PI: 8.8283
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc023298.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY225.81.2e-69191864170
                  YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnveke 89 
                            +++ +q+Cyv+C+ C+t+lavsvP tslfk+vtvrCGhCt+ll vn++  +  ++a+++   ++ ++     +++++++ ++  +++ 
  Cse_sc023298.1_g020.1  19 NNTVDQLCYVHCTRCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLMLPTPAVNQ--FHFGPSlfSPSTHGFQDDWITNGNSNF 104
                            56789***************************************************998..555565223344445544444433333 PP

                  YABBY  90 esastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                            + ++++ +  ++ s+   +++p++p+++r PekrqrvPsaynrfikeeiqrika nPdishreafsaaaknWahfP+ihfgl
  Cse_sc023298.1_g020.1 105 SMNQNYPRDVSItSSRGFNDLPKPPEINRAPEKRQRVPSAYNRFIKEEIQRIKARNPDISHREAFSAAAKNWAHFPHIHFGL 186
                            3333333333332778889*************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MSTITTTTLP PSSPQAPLNN TVDQLCYVHC TRCDTVLAVS VPCTSLFKTV TVRCGHCTNL  60
LPVNMRGLML PTPAVNQFHF GPSLFSPSTH GFQDDWITNG NSNFSMNQNY PRDVSITSSR  120
GFNDLPKPPE INRAPEKRQR VPSAYNRFIK EEIQRIKARN PDISHREAFS AAAKNWAHFP  180
HIHFGLMADH QTAAAANRTS MRQQEIEGGV MKENLFAAAN VGVSPYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.12e-71YABBY family protein