PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc023996.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 393aa MW: 44266.8 Da PI: 6.6455

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc023996.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.5e-16	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd++lv +++++G g+W++ + + g+ R++k+c++rw +yl Cse_sc023996.1_g020.1 13 KGLWTLEEDQKLVAYIEEHGHGSWRALPLKAGLQRCGKSCRLRWTNYL 60 678*******************************************97 PP
2	Myb_DNA-binding	52.8	9.3e-17	66	123	1	48
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++++++++++lG++ W+tIa +++ +Rt++++k++w+++l Cse_sc023996.1_g020.1 66 RGKFSLQEEQIIIQLHALLGNRclnvgskssfiKWSTIATHLP-KRTDNEIKNHWNTHL 123 89***************************************.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence
MGRSSTFVNG LKKGLWTLEE DQKLVAYIEE HGHGSWRALP LKAGLQRCGK SCRLRWTNYL 60 RPDIIRGKFS LQEEQIIIQL HALLGNRCLN VGSKSSFIKW STIATHLPKR TDNEIKNHWN 120 THLKKRLNKM GIDPITHKSK TAVDVNVSHM TQWENVRLEA EARFVRRSMV VSNFYQRIHL 180 PPVTSSLVPQ PLCVDVLKAW QGNTMCKLSN LSGLAFKDQT MPIMNVVECV EAQALKGMTT 240 EYHVNNWKTS QNACNTLENP KNEGIQNTLD VSDMVYGASN RNGHGVFEDD INYWSNILEI 300 LGNTSSFSPV QAAVSKSSSS FSPSTSSTKR VSPFSNVGEI VDSDIDEEEV VNTFDESMNL 360 FGDGHDREDD YDDYADQVYD LSGNLDALYG TKL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence

MGRSSTFVNG LKKGLWTLEE DQKLVAYIEE HGHGSWRALP LKAGLQRCGK SCRLRWTNYL  60
RPDIIRGKFS LQEEQIIIQL HALLGNRCLN VGSKSSFIKW STIATHLPKR TDNEIKNHWN  120
THLKKRLNKM GIDPITHKSK TAVDVNVSHM TQWENVRLEA EARFVRRSMV VSNFYQRIHL  180
PPVTSSLVPQ PLCVDVLKAW QGNTMCKLSN LSGLAFKDQT MPIMNVVECV EAQALKGMTT  240
EYHVNNWKTS QNACNTLENP KNEGIQNTLD VSDMVYGASN RNGHGVFEDD INYWSNILEI  300
LGNTSSFSPV QAAVSKSSSS FSPSTSSTKR VSPFSNVGEI VDSDIDEEEV VNTFDESMNL  360
FGDGHDREDD YDDYADQVYD LSGNLDALYG TKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	2e-79	MYB family protein