PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc024198.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28134.5 Da PI: 6.8939

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc024198.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.2	4.5e-21	67	120	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eqle+Le+ F+++++++ +++ +LA++lgL+ rq+ vWFqNrRa++k Cse_sc024198.1_g010.1 67 KKKRLTSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWK 120 56679************************************************9 PP
2	HD-ZIP_I/II	117.7	6.5e-38	67	158	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kk+rl++eq+++LE++F+ee+kL+p+ K++la+eLglqprq+avWFqnrRAR+k+kqlE y++Lk+++da+++e+++L++ev +Lr+ Cse_sc024198.1_g010.1 67 KKKRLTSEQLEALENTFQEEKKLDPDTKMKLAHELGLQPRQIAVWFQNRRARWKAKQLECLYDTLKQEFDAVSREKQKLQEEVLALRT 154 9**************************************************************************************8 PP HD-ZIP_I/II 90 elke 93 lke Cse_sc024198.1_g010.1 155 ILKE 158 8775 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
MDWNGGNPRP FIPRPAAQSS FAFLYNYNND HYVYPPGVGD MKHQMMQAPL AMMEMNQNEY 60 ENNNQDKKKR LTSEQLEALE NTFQEEKKLD PDTKMKLAHE LGLQPRQIAV WFQNRRARWK 120 AKQLECLYDT LKQEFDAVSR EKQKLQEEVL ALRTILKEQV SKRQGAGSST GYTYMSGEET 180 VESTSVATIR TTGNHHHQLT LGQHQAGPAT TNAMVPIDNN YSLNYDPSPS MATPSYSNWA 240 VLPSYP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	96	KKKRLTSEQLEALENTFQEEKKLDPDTKMK
2	115	123	RRARWKAKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	7e-48	HD-ZIP family protein