PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025092.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 354aa MW: 39337.4 Da PI: 6.9067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025092.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.7	1.7e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl Cse_sc025092.1_g010.1 14 KGPWAPEEDAKLKAYIEEHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.1	7.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ Cse_sc025092.1_g010.1 69 GGFSEEEDHIICSLYVSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGRAPCCDKA NVKKGPWAPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDHIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK 120 HRKDQLCRRK GELLLRKGSS PSEIPSSIVV SGNENNNSQD PYWPELPVMP PVPYMNKDPC 180 FVNDHTSIRK LLVKLGGKFS PDDNGNQFIN MVSHLPIDAS INLQPSPHND ENLITSSMPV 240 SSSLLIDNKY NILSTQEGQT GSFSSVFEEM YYSTNPQKLD GLEFLCGEMC EINTSGSSSV 300 ITCGDSMDWG EMSSLMGTTT NTNAINSSSY QRSLQQGVLQ QDCAHDEGPN TGFI

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGRAPCCDKA NVKKGPWAPE EDAKLKAYIE EHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDHIIC SLYVSIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
HRKDQLCRRK GELLLRKGSS PSEIPSSIVV SGNENNNSQD PYWPELPVMP PVPYMNKDPC  180
FVNDHTSIRK LLVKLGGKFS PDDNGNQFIN MVSHLPIDAS INLQPSPHND ENLITSSMPV  240
SSSLLIDNKY NILSTQEGQT GSFSSVFEEM YYSTNPQKLD GLEFLCGEMC EINTSGSSSV  300
ITCGDSMDWG EMSSLMGTTT NTNAINSSSY QRSLQQGVLQ QDCAHDEGPN TGFI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65790.1	3e-78	MYB family protein