PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc025530.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 404aa MW: 47605.2 Da PI: 8.5136

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc025530.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.1	2.5e-22	13	102	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 kf+ +Y+ ++GF+vrk+ +ksk +g+ t+++fvC+keg r+e+ ++ +++ +raetrt+C+ ++ + +k ++k+ +++++ +HnH Cse_sc025530.1_g020.1 13 KFWINYGAHIGFDVRKQWINKSKIDGHLTSARFVCNKEGIRKEDIRD-ARTKCPRAETRTNCQSRMGIAYDKqTNKYTLHDFVPKHNH 99 69*****************************************99.99***************9999************* PP FAR1 88 ela 90 l Cse_sc025530.1_g020.1 100 MLH 102 996 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MGMEFDTVEN AWKFWINYGA HIGFDVRKQW INKSKIDGHL TSARFVCNKE GIRKEDIRDA 60 RTKCPRAETR TNCQSRMGIA YDKQTNKYTL HDFVPKHNHM LHTPETVHMM SSQRKISDVQ 120 AIEIDLADDS GIKAKASYEL MSRHDQKNYL RKRRQREMKF GEAGTLLRYF QQQSLENPSF 180 YYATQLDNEE QIANIFWADA RMIMDYSYFG DVVTFDTTFN TNKELRPLGV FIGFNHHRGI 240 AIFGVSLLYD ETTESFEWLF RTFLEAHNQK KSFTLFTDQD QAMANALNTI MPNVHHGFCT 300 WHIMQNAIKN VGNIMKDNSS LFKDFKRCMY EYENEHKFEE AWKAMCDYYK VQENPWLKAI 360 YKKKEKWAKC YMKSVYTLGM RSTQLSESLN GDLKMCSLTS LGIF

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MGMEFDTVEN AWKFWINYGA HIGFDVRKQW INKSKIDGHL TSARFVCNKE GIRKEDIRDA  60
RTKCPRAETR TNCQSRMGIA YDKQTNKYTL HDFVPKHNHM LHTPETVHMM SSQRKISDVQ  120
AIEIDLADDS GIKAKASYEL MSRHDQKNYL RKRRQREMKF GEAGTLLRYF QQQSLENPSF  180
YYATQLDNEE QIANIFWADA RMIMDYSYFG DVVTFDTTFN TNKELRPLGV FIGFNHHRGI  240
AIFGVSLLYD ETTESFEWLF RTFLEAHNQK KSFTLFTDQD QAMANALNTI MPNVHHGFCT  300
WHIMQNAIKN VGNIMKDNSS LFKDFKRCMY EYENEHKFEE AWKAMCDYYK VQENPWLKAI  360
YKKKEKWAKC YMKSVYTLGM RSTQLSESLN GDLKMCSLTS LGIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-71	FAR1 family protein