PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc025891.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB_related
Protein Properties Length: 604aa    MW: 68348.5 Da    PI: 8.5542
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc025891.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-13400439446
                            S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            +T+eEde l+++++++G++ Wk+Ia+ mg  +++ ++k+ w+ 
  Cse_sc025891.1_g010.1 400 FTPEEDETLKEYHEKYGNK-WKKIAELMG--KSRLHVKDNWRR 439
                            9******************.********8..8*******9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    
MGKTGEEVDV SPVTMGKKSK KNKDKINDLP DADGDGNSQV EIDDALPKEK KGHKHRGKKK  60
KKKESESNED GAEDRPDMGN LVDDADLGEK KKKKKRESGS NEDGVEDRPD KGNLVDDADL  120
GEENKKKKKK KKKRESGSKE DGVEDQPDKG DLVTDGDVSK KDKKKKRKRD SPEKTQIEEN  180
EDNQNDGSKL SIEDSVSEKS HNKKSKLDAQ NSDTEMKETQ DDNEDSKGSK EKKKTKVKGS  240
KAQNKTTEPV ENNTGKAKSK KVSFAGHVEF FPSSDTGPEK QTTKGDGLVR AKSKKVSFAG  300
HVEFFPSSDT GPEKQTTKGD GLVRGKRFTP EEDAIIKDAV NNYIEDNNLG DDGLMMVLNC  360
GSYGLRKCWL EIAKCIPYRP HAAVYSRAHI LFERNEKRGF TPEEDETLKE YHEKYGNKWK  420
KIAELMGKSR LHVKDNWRRI KIGNTKGGKW VQKEYQSLYD LVNMDLKMKV FSEKKSKHGM  480
LRDNIPWGAI SEKLSTRSDA RCCVKWYKLR SSMVAEGLWS DTDDYLMIGK LYELDAACVD  540
DVDWDNLLEH RTGDICRKRW AQMVKHIGDY GSKPFAEQVD ILAERYSPDL AEDREAWDNK  600
PVVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11754KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
25895KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
35996KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
46097KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
59096KKKKKKR
690127KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
791128KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
892129KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
993130KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
10125133KKKKKKKKK
11125131KKKKKKR
12125162KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
13126134KKKKKKKKK
14126132KKKKKKR
15126163KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
16127133KKKKKKR
17127164KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
18128134KKKKKKR
19128165KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
20129166KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
21130167KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
22131168KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
23160168KKKKKKKKK
24163169KKKKKKR
25163168KKKKRK
26163200KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
27164201KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
28165202KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
29166203KKSKKNKDKINDLPDADGDGNSQVEIDDALPKEKKGHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-117MYB_related family protein